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When processing a set of files by specifying a directory to -s it would be helpful if the the process did not halt if a single raw file fails to run, e.g. due to the target or decoy file being empty. If this behaviour is preferred then an additional -skipOnFail argument could be added so that MSPathFinder continues to the next raw file.
The text was updated successfully, but these errors were encountered:
Hmm... Looking more at the code, it is supposed to continue processing spectrum files when one fails; if it isn't behaving that way, I will need more information (like a copy of the output, and maybe files and parameters).
When processing a set of files by specifying a directory to -s it would be helpful if the the process did not halt if a single raw file fails to run, e.g. due to the target or decoy file being empty. If this behaviour is preferred then an additional -skipOnFail argument could be added so that MSPathFinder continues to the next raw file.
The text was updated successfully, but these errors were encountered: