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issue with plot getVariableGenes #10

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csandorfr opened this issue May 26, 2016 · 0 comments
Open

issue with plot getVariableGenes #10

csandorfr opened this issue May 26, 2016 · 0 comments

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@csandorfr
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Hi,

In the plot draw by getVariableGenes there are some missing elements as:

(1) spike-in
(2) fit curve

is_het = getVariableGenes(nCounts_batch$ENS, techNoise$fit, method = "fdr",threshold = 0.1, fit_type="counts",sfEndo=f_size_batch$sfENS, sfERCC=f_size_batch$sfERCC)

FALSE TRUE
27752 5461
Error in points(meansERCC, cv2ERCC, pch = 20, cex = 1, col = "blue") :
object 'meansERCC' not found

It possible to add this

Many thanks

Cynthia
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@csandorfr