From 01980336fcbfc24aafc6553077a1f7c4232ca173 Mon Sep 17 00:00:00 2001 From: Benjamin Wingfield Date: Fri, 24 May 2024 12:03:36 +0100 Subject: [PATCH] Bump minimum nextflow version to 23.10.0 (#297) * Update nextflow.config * Update README.md * Update standard-test.yml * Update changelog.rst * Update README.md * Update standard-test.yml --- .github/workflows/standard-test.yml | 4 ++-- README.md | 4 ++-- docs/changelog.rst | 2 ++ nextflow.config | 2 +- 4 files changed, 7 insertions(+), 5 deletions(-) diff --git a/.github/workflows/standard-test.yml b/.github/workflows/standard-test.yml index fd602050..7b964700 100644 --- a/.github/workflows/standard-test.yml +++ b/.github/workflows/standard-test.yml @@ -25,7 +25,7 @@ jobs: matrix: test_profile: ["test"] profile: ["docker"] - nxf_ver: ['22.10.0', 'latest'] + nxf_ver: ['23.10.0', 'latest'] steps: - name: Extract branch name @@ -62,7 +62,7 @@ jobs: matrix: test_profile: ["test"] profile: ["singularity"] - nxf_ver: ['22.10.0', 'latest'] + nxf_ver: ['23.10.0', 'latest'] steps: - name: Extract branch name diff --git a/README.md b/README.md index aac87a30..7f947736 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ [![pgscatalog/pgsc_calc CI](https://github.com/PGScatalog/pgsc_calc/actions/workflows/ci.yml/badge.svg)](https://github.com/PGScatalog/pgsc_calc/actions/workflows/ci.yml) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5970794.svg)](https://doi.org/10.5281/zenodo.5970794) -[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-≥22.10.0-23aa62.svg?labelColor=000000)](https://www.nextflow.io/) +[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-≥23.10.0-23aa62.svg?labelColor=000000)](https://www.nextflow.io/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) @@ -44,7 +44,7 @@ See documentation for a list of planned [features under development](https://pgs 1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) -(`>=22.10.0`) +(`>=23.10.0`) 2. Install [`Docker`](https://docs.docker.com/engine/installation/) or [`Singularity (v3.8.3 minimum)`](https://www.sylabs.io/guides/3.0/user-guide/) diff --git a/docs/changelog.rst b/docs/changelog.rst index b401694a..ce25dcbc 100644 --- a/docs/changelog.rst +++ b/docs/changelog.rst @@ -11,6 +11,8 @@ will only occur in major versions with changes noted in this changelog. pgsc_calc v2.0.0-alpha.6 (2024-05-24) ------------------------------------- +Please note the minimum required nextflow version has been updated to v23.10.0, released in October 2023. + Improvements * Migrate our custom python tools to new https://github.com/PGScatalog/pygscatalog packages diff --git a/nextflow.config b/nextflow.config index 415345ab..a87556a9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -269,7 +269,7 @@ manifest { homePage = 'https://github.com/pgscatalog/pgsc_calc' description = 'The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation' mainScript = 'main.nf' - nextflowVersion = '>=22.10.0' + nextflowVersion = '>=23.10.0' version = '2.0.0-alpha.6' }