_pkgdown.yml

template:
  params:
    bootswatch: cosmo

home:
  links:
  - text: Ask a question
    href: http://forums.ohdsi.org

navbar:
  structure:
    left:
    - home
    - intro
    - reference
    - articles
    - news
    right: [hades, github]
  components:
    home:
      icon: fa-home fa-lg
      href: index.html
    reference:
      text: Reference
      href: reference/index.html
    intro:
      text: Get started
      href: articles/InstallationGuide.html
    news:
      text: Changelog
      href: news/index.html
    github:
      icon: fa-github fa-lg
      href: https://github.com/OHDSI/PatientLevelPrediction
    hades:
      text: hadesLogo
      href: https://ohdsi.github.io/Hades

reference:
  - title: "Aggregate Covariate Analysis"
    desc: >
      This analysis calculates the aggregate characteristics for a Target cohort (T), an Outcome cohort (O) and combiations of T with O during time at risk and T without O during time at risk.
    contents: has_concept("Aggregate")
  - title: "Dechallenge Rechallenge Analysis"
    desc: >
      For a given Target cohort (T) and Outcome cohort (O) find any occurrances of a dechallenge (when the T cohort stops close to when O started) and a rechallenge (when T restarts and O starts again)  This is useful for investigating causality between drugs and events.
    contents: has_concept("DechallengeRechallenge")
  - title: "Time to Event Analysis"
    desc: >
      This analysis calculates the timing between the Target cohort (T) and an Outcome cohort (O).
    contents: has_concept("TimeToEvent")
  - title: "Run Large Scale Characterization Study"
    desc: >
      Run multipe aggregate covariate analysis, time to event and dechallenge/rechallenge studies.
    contents: has_concept("LargeScale")
  - title: "Save Load"
    desc: >
      Functions to save the analysis settings and the results (as sqlite or csv files).
    contents: has_concept("SaveLoad")
  - title: "Insert into Database"
    desc: >
      Functions to insert the results into a database.
    contents: has_concept("Database")
  - title: "Shiny App"
    desc: >
      Functions to interactively exlore the results from runCharacterizationAnalyses().
    contents: has_concept("Shiny")
  - title: "Custom covariates"
    desc: >
      Code to create covariates during cohort start and end
    contents: has_concept("CovariateSetting")
  - title: "Incremental"
    desc: >
      Code to run incremetal model
    contents: has_concept("Incremental")