Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

SLURM Support? #12

Open
IttaiEres opened this issue Mar 22, 2018 · 0 comments
Open

SLURM Support? #12

IttaiEres opened this issue Mar 22, 2018 · 0 comments

Comments

@IttaiEres
Copy link

Hi,

This pipeline looks great for running Hi-C analyses--just wondering, do you currently or do you expect to in the future have support for other HPC cluster workload managers? My cluster uses SLURM and scientific linux and I've been having a difficult time getting it to work there. Would I just (hopefully) need to modify all the qsub options and commands in the qsub files in /code.main to be their equivalent SLURM commands? The other big difference I'd see is in loading of the modulefiles and what is available, but I think it's much easier to work around that.

Thanks,
Ittai

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant