Plan for 0.6.2

[matinnuhamunada]

This should be a small patch:

• remove git clones from post-deployments
• examples doesn't work for automlst because of the number of genomes
• report for gtdbtk and checkm breaks

Current size:

52K     ./.git/hooks
4.0K    ./.git/info
0       ./.git/branches
24K     ./.git/refs
48M     ./.git/objects
28K     ./.git/logs
48M     ./.git

16K     ./.examples/_genome_project_example
344K    ./.examples/_pep_example
4.0K    ./.examples/_profile_example
8.0K    ./.examples/lactobacillus_delbruecki
8.0K    ./.examples/lanthipeptide
384K    ./.examples

4.0K    ./.github/workflows
4.0K    ./.github

64K     ./.tests/config
1.1M    ./.tests/data
4.7M    ./.tests/unit
5.7M    ./.tests

801M    ./resources/arts
0       ./resources/ziemertlab-arts-b4789c6b3a88
276M    ./resources/automlst-simplified-wrapper-main
44G     ./resources/bigslice
35M     ./resources/deeptfactor
62G     ./resources/eggnog_db
7.8G    ./resources/antismash_db
3.4G    ./resources/BiG-SCAPE
1.4G    ./resources/checkm
17M     ./resources/mibig
66G     ./resources/gtdbtk
184G    ./resources

404K    ./workflow/bgcflow
116K    ./workflow/envs
13M     ./workflow/notebook
178M    ./workflow/report
172K    ./workflow/rules
16K     ./workflow/schemas
190M    ./workflow

1.2M    ./.snakemake/metadata
0       ./.snakemake/incomplete
0       ./.snakemake/shadow
0       ./.snakemake/conda-archive
34G     ./.snakemake/conda
0       ./.snakemake/singularity
0       ./.snakemake/auxiliary
184K    ./.snakemake/log
0       ./.snakemake/locks
34G     ./.snakemake

4.0K    ./config

332K    ./data/raw
4.0K    ./data/external
2.7G    ./data/interim
122M    ./data/processed
2.9G    ./data

221G    .