make_figs.m

% where data is stored (that you download from figshare)
dataroot = '/media/carsen/DATA2/grive/10krecordings/imgResp/';        
% where processed data and results are saved
matroot  = '/media/carsen/DATA2/grive/10krecordings/stimResults/';

addpath(genpath('.'));


%% makes fig1
fig1(dataroot, matroot);

%% makes fig2
fig2(matroot);

%% makes fig3
fig3(dataroot, matroot);

%% makes fig4 (relies on saved structure from fig3 (matroot/alphas.mat)!)
fig4(matroot);

%% p-value and stim-related variance figure
suppfig_stimvar(matroot);

%% controls (z-scoring responses, subtracting spont PCs)
suppfig_controls_spontPCs(matroot);

%% low-rank receptive field figure
suppfig_RFs(matroot);

%% simulated data powerlaws
suppfig_sim_gain_deconv(matroot);

%% increasing neurons and stimuli
suppfig_incrNeuStim(dataroot,matroot);

%% increasing neurons by concatenating recordings
suppfig_concatenate_recordings(matroot);

%% statistics from gabor fits
suppfig_gabors(matroot);

%% makes ephys powerlaw figure 
% script works because I've added the processed powerlaws to the repository
% (raw data not yet online, sorry!)
suppfig_ephys_powerlaw(matroot);

%% make sorted 2D figure
% add path to rastermap
addpath('/media/carsen/DATA2/Github/rastermap/matlab')
suppfig_sort2d(matroot);