diff --git a/src/sparcscore/pipeline/segmentation.py b/src/sparcscore/pipeline/segmentation.py index dd8a6e8c..a9bf1b55 100644 --- a/src/sparcscore/pipeline/segmentation.py +++ b/src/sparcscore/pipeline/segmentation.py @@ -280,7 +280,7 @@ def save_segmentation_zarr(self, labels=None): loc = parse_url(path, mode="w").store group = zarr.group(store=loc) - segmentation_names = ["nucleus", "cyotosol"] + segmentation_names = ["nucleus", "cytosol"] # check if segmentation names already exist if so delete for seg_names in segmentation_names: diff --git a/src/sparcscore/pipeline/workflows.py b/src/sparcscore/pipeline/workflows.py index 2cdfe4bc..e9c4a74d 100755 --- a/src/sparcscore/pipeline/workflows.py +++ b/src/sparcscore/pipeline/workflows.py @@ -1071,7 +1071,7 @@ def _get_downsampling_parameters(self): return N, smoothing_kernel_size def _finalize_segmentation_results(self, size_padding): - # nuclear and cyotosolic channels are required (used for segmentation) + # nuclear and cytosolic channels are required (used for segmentation) required_maps = [self.maps["normalized"][0], self.maps["normalized"][1]] # Feature maps are all further channel which contain additional phenotypes e.g. for classification