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Hi, I noticed this line in the sam method of VolcanoPlot.py checks normalization status of the processing info instead of the Log2 status:
Here's what I suggest it to be instead: if self.dataset.preprocessing_info['Log2-transformed'] is False:
Additionally, this method doesn't allow s0 to be defined by user, and instead defines constants within itself. Could this be added for users trying to call a moderated t-test and SAM FDR method?
The text was updated successfully, but these errors were encountered:
alphapeptstats/alphastats/plots/VolcanoPlot.py
Line 152 in 89843be
Hi, I noticed this line in the sam method of VolcanoPlot.py checks normalization status of the processing info instead of the Log2 status:
Here's what I suggest it to be instead:
if self.dataset.preprocessing_info['Log2-transformed'] is False:
Additionally, this method doesn't allow s0 to be defined by user, and instead defines constants within itself. Could this be added for users trying to call a moderated t-test and SAM FDR method?
The text was updated successfully, but these errors were encountered: