performance_test_installer.yml

name: Performance test pyinstaller

env:
  TMP_FOLDER: E:/test_dir/

on:
  workflow_dispatch:
jobs:
  Performance_test_pyinstaller:
    runs-on: self-hosted
    timeout-minutes: 1440
    steps:
      - uses: actions/checkout@v2
      - name: Freezing code
        run: |
          remove-item -path "C:\Users\admin\.conda\envs\alphapeptinstaller" -Force -Recurse -ErrorAction SilentlyContinue
          conda deactivate
          cd installer\one_click_windows
          .\create_installer_windows.bat
      - name: Install package
        run: |
          conda activate alphapeptinstaller
          pip install pymongo
          pip install dnspython
          pip install wget
      - name: Run Alphapept on Thermo (HeLa_Thermo_Win)
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" thermo_hela "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on Thermo (HeLa_Thermo_Win_LargeFasta)
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" thermo_hela_large_fasta "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on Thermo (HeLa_Thermo_Win_Modifications)
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" thermo_hela_modifications "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on Bruker (HeLa_Bruker_Win)
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" bruker_hela "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on PXD006109
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" PXD006109 "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on PXD010012
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" PXD010012 "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on PXD015087
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" PXD015087 "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on PXD015087 w. Matching
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" PXD015087_matching "${{ secrets.MONGODB_PW }}"
      - name: Run Alphapept on PXD015087 w. Matching + Fractions
        run: |
          conda activate alphapeptinstaller
          python test_ci.py "${{ env.TMP_FOLDER }}" PXD015087_matching_fraction "${{ secrets.MONGODB_PW }}"