diff --git a/workflows/params_segment_macaque_ants_skull.json b/workflows/params_segment_macaque_ants_skull.json index 18a30f2..44d3353 100755 --- a/workflows/params_segment_macaque_ants_skull.json +++ b/workflows/params_segment_macaque_ants_skull.json @@ -176,30 +176,30 @@ } }, "skull_ct_pipe": + { + "ct_skull_auto_mask": { - "ct_skull_auto_mask": - { - "kmeans": false, - "sample_bins": 30, - "distance": 10, - "operation": "higher", - "index": 3 - }, - "ct_skull_dilate": - { - "operation" : "modal", - "kernel_shape" : "boxv", - "kernel_size" : 3.0 - }, - "ct_skull_erode": - { - "kernel_shape" : "boxv", - "kernel_size" : 3.0 - }, - "ct_skull_fov": - { - "brainsize" : 65 - } + "kmeans": false, + "sample_bins": 30, + "distance": 10, + "operation": "higher", + "index": 3 + }, + "ct_skull_dilate": + { + "operation" : "modal", + "kernel_shape" : "boxv", + "kernel_size" : 3.0 + }, + "ct_skull_erode": + { + "kernel_shape" : "boxv", + "kernel_size" : 3.0 + }, + "ct_skull_fov": + { + "brainsize" : 65 + } }, "angio_pipe": { @@ -213,17 +213,6 @@ "img_type": 3, "output_biascorrected": true, "output_biasfield": true - }, - "angio_dilate": - { - "operation": "modal", - "kernel_shape": "boxv", - "kernel_size": 5.0 - }, - "angio_erode": - { - "kernel_shape": "boxv", - "kernel_size": 5.0 } } }