diff --git a/vignettes/visiumStitched.Rmd b/vignettes/visiumStitched.Rmd index 704302f..dea7cc6 100644 --- a/vignettes/visiumStitched.Rmd +++ b/vignettes/visiumStitched.Rmd @@ -48,16 +48,25 @@ bib <- c( BiocFileCache = citation("BiocFileCache")[1], BiocStyle = citation("BiocStyle")[1], dplyr = citation("dplyr")[1], + DropletUtils = citation("DropletUtils")[1], ggplot2 = citation("ggplot2")[1], + imager = citation("imager")[1], knitr = citation("knitr")[1], pkgcond = citation("pkgcond")[1], + readr = citation("readr")[1], RefManageR = citation("RefManageR")[1], + rjson = citation("rjson")[1], rmarkdown = citation("rmarkdown")[1], + S4Vectors = citation("S4Vectors")[1], sessioninfo = citation("sessioninfo")[1], + Seurat = citation("Seurat")[1], SpatialExperiment = citation("SpatialExperiment")[1], spatialLIBD = citation("spatialLIBD")[1], + stringr = citation("stringr")[1], + SummarizedExperiment = citation("SummarizedExperiment")[1], testthat = citation("testthat")[1], - visiumStitched = citation("visiumStitched")[1] + visiumStitched = citation("visiumStitched")[1], + xml2 = citation("xml2")[1] ) ``` @@ -460,15 +469,23 @@ The `r Biocpkg("visiumStitched")` package `r Citep(bib[["visiumStitched"]])` was * `r Biocpkg("BiocFileCache")` `r Citep(bib[["BiocFileCache"]])` * `r Biocpkg("BiocStyle")` `r Citep(bib[["BiocStyle"]])` * `r CRANpkg("dplyr")` `r Citep(bib[["dplyr"]])` +* `r Biocpkg("DropletUtils")` `r Citep(bib[["DropletUtils"]])` * `r CRANpkg("ggplot2")` `r Citep(bib[["ggplot2"]])` +* `r CRANpkg("imager")` `r Citep(bib[["imager"]])` * `r CRANpkg("knitr")` `r Citep(bib[["knitr"]])` * `r CRANpkg("pkgcond")` `r Citep(bib[["pkgcond"]])` * `r CRANpkg("RefManageR")` `r Citep(bib[["RefManageR"]])` +* `r CRANpkg("rjson")` `r Citep(bib[["rjson"]])` * `r CRANpkg("rmarkdown")` `r Citep(bib[["rmarkdown"]])` +* `r Biocpkg("S4Vectors")` `r Citep(bib[["S4Vectors"]])` * `r CRANpkg("sessioninfo")` `r Citep(bib[["sessioninfo"]])` +* `r CRANpkg("Seurat")` `r Citep(bib[["Seurat"]])` * `r Biocpkg("SpatialExperiment")` `r Citep(bib[["SpatialExperiment"]])` * `r Biocpkg("spatialLIBD")` `r Citep(bib[["spatialLIBD"]])` +* `r CRANpkg("stringr")` `r Citep(bib[["stringr"]])` +* `r Biocpkg("SummarizedExperiment")` `r Citep(bib[["SummarizedExperiment"]])` * `r CRANpkg("testthat")` `r Citep(bib[["testthat"]])` +* `r CRANpkg("xml2")` `r Citep(bib[["xml2"]])` This package was developed using `r BiocStyle::Biocpkg("biocthis")`.