From 1163744d8c30a24cdbdee73876f5f2e3fdecc59d Mon Sep 17 00:00:00 2001 From: Nick-Eagles Date: Wed, 24 Jul 2024 15:04:48 -0400 Subject: [PATCH] Add full description of required columns for 'sample_info' --- R/add_array_coords.R | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/R/add_array_coords.R b/R/add_array_coords.R index 3c27758..b6b5a77 100644 --- a/R/add_array_coords.R +++ b/R/add_array_coords.R @@ -16,8 +16,10 @@ #' process each group as if it really were one capture area in the first place. #' #' @param spe A \code{SpatialExperiment} -#' @param sample_info A \code{tibble} with columns \code{capture_area} and -#' \code{group} +#' @param sample_info A \code{tibble} with columns \code{capture_area}, +#' \code{group}, \code{fiji_xml_path}, \code{fiji_image_path}, +#' \code{spaceranger_dir}, \code{intra_group_scalar}, and +#' \code{group_hires_scalef} #' @param coords_dir A \code{character(1)} vector giving the directory #' containing sample directories each with \code{tissue_positions.csv}, #' \code{scalefactors_json.json}, and \code{tissue_lowres_image.png} files