diff --git a/data/marker_stats_1vAll.RData b/data/marker_stats_1vAll.RData new file mode 100644 index 0000000..c88b803 Binary files /dev/null and b/data/marker_stats_1vAll.RData differ diff --git a/vignettes/Marker_Finding.Rmd b/vignettes/Marker_Finding.Rmd index 296a4cb..0cba13b 100644 --- a/vignettes/Marker_Finding.Rmd +++ b/vignettes/Marker_Finding.Rmd @@ -278,7 +278,7 @@ is stored as `BrNum`. Note this function can take a bit of time to run. -```{r `Run findMarkers_1vALL`} +```{r `Run findMarkers_1vALL`, eval=FALSE} ## Run 1vALL DE to find markers for each cell type marker_stats_1vAll <- findMarkers_1vAll( sce = sce, # sce is the SingleCellExperiment with our data @@ -287,6 +287,13 @@ marker_stats_1vAll <- findMarkers_1vAll( mod = "~BrNum" # Control for donor stored in "BrNum" with mod ) ``` +```{r `load 1vALL data`, echo=FALSE} +# save(marker_stats_1vAll, file = here::here("data", "marker_stats_1vAll.RData")) + +load(system.file("data", "marker_stats_1vAll.RData", package = "DeconvoBuddies")) + +``` + The function `findMarkers_1vALL()` returns a `tibble` with the following columns: