pyproject.toml

[project]
name = "pz-rail"
description = "Redshift Assessment Infrastructure Layers"
readme = "README.rst"
requires-python = ">=3.8"
license = { file = "LICENSE" }
authors = [
    { name = "The LSST DESC PZ WG", email = "aimalz@nyu.edu" }
]
classifiers = [
    "Development Status :: 4 - Beta",
    "License :: OSI Approved :: MIT License",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Natural Language :: English",
    "Operating System :: POSIX"
]
dynamic = ["version"]
dependencies = [
    "h5py",
    "numpy",
    "pandas>=1.1",
    "tables-io>=0.7.5",
    "ceci>=1.10.1",
    "pyyaml",
    "minisom",
    "scipy>=1.9.0",
    "pz-hyperbolic-temp",
    "qp-prob[full]>=0.8.3",
    "scikit-learn",
    "pzflow",
    "healpy",
    "photerr",
    "dustmaps",
    "pathos",
    "somoclu",
    "jax",
    "dsps",
    "deprecated",
]

[project.optional-dependencies]
dev = [
    "coverage",
    "pylint",
    "pytest",
    "pytest-cov",
    "seaborn",
    "yamllint",
]

[build-system]
requires = ["setuptools>=61", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]
write_to = "src/rail/core/_version.py"

[tool.setuptools.package-data]
"rail.examples.estimation.data.AB" = ["*.txt"]
"rail.examples.estimation.data.FILTER" = ["*.res"]
"rail.examples.estimation.data.SED" = ["*.sed", "*.list"]
"rail.examples.estimation" = ["*.pkl"]
"rail.examples.creation.configs" = ["*.yaml"]
"rail.examples.creation.data" = ["*.pkl", "*.hdf5"]
"rail.examples.creation.success_rate_data" = ["*.txt"]
"rail.examples.goldenspike" = ["*.yaml"]
"rail.examples.goldenspike.data" = ["*.pkl", "*.pq"]
"rail.examples.testdata" = ["*.ipynb", "*.fits", "*.hdf5", "*.pq", "*.md"]

[tool.coverage.run]
source = ["src/rail"]
branch = false

[tool.coverage.report]
show_missing = true
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "if self.debug:",
    "if settings.DEBUG",
    "raise AssertionError",
    "raise NotImplementedError",
    "if 0:",
    "if __name__ == .__main__.:",
    "if TYPE_CHECKING:"
]

[tool.black]
line-length = 110
target-version = ["py310"]

[tool.pydocstyle]
convention = "numpy"
add_select = [
    "D212" # Multi-line docstring summary should start at the first line
]
add-ignore = [
    "D105", # Missing docstring in magic method
    "D102", # Missing docstring in public method (needed for docstring inheritance)
    "D100", # Missing docstring in public module
    # Below are required to allow multi-line summaries.
    "D200", # One-line docstring should fit on one line with quotes
    "D205", # 1 blank line required between summary line and description
    "D400", # First line should end with a period
    # Properties shouldn't be written in imperative mode. This will be fixed
    # post 6.1.1, see https://github.com/PyCQA/pydocstyle/pull/546
    "D401",
]

[tool.pylint]
disable = [
    "abstract-method",
    "invalid-name",
    "too-many-statements",
    "missing-module-docstring",
    "missing-class-docstring",
    "missing-function-docstring",
    "too-few-public-methods",
    "duplicate-code"
]
max-line-length = 110
max-locals = 50
max-branches = 25
max-public-methods = 50

[tool.isort]
profile = "black"
line_length = 110

[tool.pytest.ini_options]
addopts = [
    "--cov=rail",
    "--cov-report=html"
]
flake8-ignore = "E203"
markers = [
    "slow: marks tests as slow (deselect with '-m \"not slow\"')",
]

[tool.mypy]
disallow_untyped_defs = true
disallow_incomplete_defs = true
ignore_missing_imports = true
namespace_packages = true
plugins = "sqlalchemy.ext.mypy.plugin"
show_error_codes = true
strict_equality = true
warn_redundant_casts = true
warn_unreachable = true
warn_unused_ignores = true