From 8214336aeb7ceb138d50677004dbbe2628f33394 Mon Sep 17 00:00:00 2001
From: Douglas Bates <dmbates@gmail.com>
Date: Tue, 5 Dec 2023 13:01:57 -0600
Subject: [PATCH] Update versions of dependencies, comment out @debug calls
 (#733)

* Comment out @debug calls

* Update package versions and Aqua keyword.
---
 NEWS.md          | 6 ++++++
 Project.toml     | 6 ++++--
 src/Xymat.jl     | 2 +-
 src/grouping.jl  | 6 +++---
 test/runtests.jl | 2 +-
 5 files changed, 15 insertions(+), 7 deletions(-)

diff --git a/NEWS.md b/NEWS.md
index 51e51d8bd..4d3020922 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,8 @@
+MixedModels v4.22.3 Release Notes
+==============================
+* Comment out calls to `@debug` [#733]
+* Update package versions in compat and change `Aqua.test_all` argument name [#733]
+
 MixedModels v4.22.0 Release Notes
 ==============================
 * Support for equal-tail confidence intervals for `MixedModelBootstrap`. [#715]
@@ -484,3 +489,4 @@ Package dependencies
 [#709]: https://github.com/JuliaStats/MixedModels.jl/issues/709
 [#715]: https://github.com/JuliaStats/MixedModels.jl/issues/715
 [#717]: https://github.com/JuliaStats/MixedModels.jl/issues/717
+[#733]: https://github.com/JuliaStats/MixedModels.jl/issues/733
diff --git a/Project.toml b/Project.toml
index a45bb8560..ff790d508 100644
--- a/Project.toml
+++ b/Project.toml
@@ -30,12 +30,14 @@ Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
 TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9"
 
 [compat]
-Aqua = "0.7"
+Aqua = "0.8"
 Arrow = "1, 2"
-BSplineKit = "0.14, 0.15, 0.16"
+BSplineKit = "0.14, 0.15, 0.16, 0.17"
 DataAPI = "1"
+DataFrames = "1"
 Distributions = "0.21, 0.22, 0.23, 0.24, 0.25"
 GLM = "1.8.2"
+InteractiveUtils = "1"
 JSON3 = "1"
 LinearAlgebra = "1"
 Markdown = "1"
diff --git a/src/Xymat.jl b/src/Xymat.jl
index 76c768ad6..b85d81d8d 100644
--- a/src/Xymat.jl
+++ b/src/Xymat.jl
@@ -52,7 +52,7 @@ Note: automatic rank deficiency handling may be added to this method in the futu
 the vignette "[Rank deficiency in mixed-effects models](@ref)" for general `FeTerm`.
 """
 function FeTerm(X::SparseMatrixCSC, cnms::AbstractVector{String})
-    @debug "Full rank is assumed for sparse fixed-effect matrices."
+    #@debug "Full rank is assumed for sparse fixed-effect matrices."
     rank = size(X, 2)
     return FeTerm{eltype(X),typeof(X)}(X, collect(1:rank), rank, collect(cnms))
 end
diff --git a/src/grouping.jl b/src/grouping.jl
index 1d6e90866..eb4cfa490 100644
--- a/src/grouping.jl
+++ b/src/grouping.jl
@@ -44,10 +44,10 @@ function StatsModels.apply_schema(
     context::AbstractTerm,
 )
     aliased = drop_term(context, t)
-    @debug "$t in context of $context: aliases $aliased\n  seen already: $(schema.already)"
+    #@debug "$t in context of $context: aliases $aliased\n  seen already: $(schema.already)"
     for seen in schema.already
         if StatsModels.symequal(aliased, seen)
-            @debug "  aliased term already present: $seen"
+            #@debug "  aliased term already present: $seen"
             return t
         end
     end
@@ -57,6 +57,6 @@ function StatsModels.apply_schema(
     # repair:
     new_contrasts = StatsModels.ContrastsMatrix(Grouping(), t.contrasts.levels)
     t = CategoricalTerm(t.sym, new_contrasts)
-    @debug "  aliased term absent, repairing: $t"
+    #@debug "  aliased term absent, repairing: $t"
     return t
 end
diff --git a/test/runtests.jl b/test/runtests.jl
index 42893d3fb..797989bb7 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -15,7 +15,7 @@ import LinearAlgebra: BLAS
     # because we actually need one at one point for _same_family()
     Aqua.test_all(MixedModels; ambiguities=false, unbound_args=false,
                   # XXX TODO: upstream this piracy
-                  piracy=(;treat_as_own=[GLM.wrkresp!, Base.:|]))
+                  piracies=(;treat_as_own=[GLM.wrkresp!, Base.:|]))
 end
 
 include("utilities.jl")