Dockerfile

ARG TIDYVERSE_TAG

FROM rocker/tidyverse:${TIDYVERSE_TAG}

# Clang seems to be more memory efficient than g++
RUN apt-get update -y && apt-get install -y --no-install-recommends libglpk-dev clang-3.6 \
    && apt-get clean \
    && rm -rf /var/lib/apt/lists/*

ENV R_PACKAGES="\
    dagitty \
    future \
" 

RUN install2.r --error --skipinstalled $R_PACKAGES

RUN mkdir -p $HOME/.R/ \ 
  && echo "CXX=clang++ -stdlib=libc++ -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-omit-frame-pointer -fsanitize-address-use-after-scope -fno-sanitize=alignment -frtti" >> $HOME/.R/Makevars \
  && echo "CC=clang -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-omit-frame-pointer -fsanitize-address-use-after-scope -fno-sanitize=alignment" >> $HOME/.R/Makevars \
  && echo "CFLAGS=-O3 -Wall -pedantic -mtune=native" >> $HOME/.R/Makevars \
  && echo "FFLAGS=-O2 -mtune=native" >> $HOME/.R/Makevars \
  && echo "FCFLAGS=-O2 -mtune=native" >> $HOME/.R/Makevars \
  && echo "CXXFLAGS=-O3 -march=native -mtune=native -fPIC" >> $HOME/.R/Makevars \
  && echo "MAIN_LD=clang++ -stdlib=libc++ -fsanitize=undefined,address" >> $HOME/.R/Makevars \
  && echo "rstan::rstan_options(auto_write = TRUE)" >> /home/rstudio/.Rprofile \
  && echo "options(mc.cores = parallel::detectCores())" >> /home/rstudio/.Rprofile

RUN Rscript -e 'Sys.setenv(DOWNLOAD_STATIC_LIBV8 = 1); install.packages("rstan")'
 
RUN install2.r --error --skipinstalled rstanarm

ENV BAYES_R_PACKAGES="\
    brms \
    tidybayes \
    bayesplot \
    Matrix \
" 

RUN install2.r --error --skipinstalled $BAYES_R_PACKAGES