diff --git a/DESCRIPTION b/DESCRIPTION index 15905bf..fab7617 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: PKPDsim Type: Package Title: Tools for Performing Pharmacokinetic-Pharmacodynamic Simulations -Version: 1.3.0 -Date: 2023-02-24 +Version: 1.4.0 +Date: 2024-07-17 Authors@R: c( person("Ron", "Keizer", email = "ron@insight-rx.com", role = c("aut", "cre")), person("Jasmine", "Hughes", email = "jasmine@insight-rx.com", role = "aut"), @@ -10,7 +10,7 @@ Authors@R: c( person("Kara", "Woo", email = "kara@insight-rx.com", role = c("aut")), person("Jordan", "Brooks", email = "jordan.brooks@insight-rx.com", role = "aut"), person("InsightRX", role = c("cph", "fnd"))) -Depends: R (>= 3.0.2) +Depends: R (>= 4.0.0) Imports: Rcpp (>= 0.12.9), BH, data.table, stringr, MASS, randtoolbox, jsonlite, stats, parallel, magrittr Suggests: @@ -19,7 +19,7 @@ Suggests: mockery, knitr, rmarkdown -LinkingTo: BH, Rcpp (>= 0.12.9) +LinkingTo: BH, Rcpp (>= 1.0.13) Description: Simulate dose regimens for pharmacokinetic-pharmacodynamic (PK-PD) models described by differential equation (DE) systems. Simulation using ADVAN-style analytical equations is also supported (Abuhelwa et al. (2015) diff --git a/NEWS.md b/NEWS.md index 9a77d5d..808a6e2 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,30 @@ +# PKPDsim 1.4.0 + +This release fixes an issue introduced with an upgrade in Rcpp (1.0.13), as described here: https://github.com/RcppCore/Rcpp/issues/1311. + +Minor other fixes include: +- Fixed the logic regarding a warning about infusion lengths +- Added several example model metadata files, and improve functionality for installing example models +- Ensure that paths with spaces are properly parsed +- Update debugging informational messages +- Make it easier to work with model characteristics +- Make sure infusion length can be used with 'sc' or other non-iv administration types +- Added feature to allow scaling of the infusion duration +- Added feature to calculate AUC pre-ss +- Fix interpolation of time-varying covariates in `pk` blocks. +- Fix regimen_to_nm() conversion function +- Added requirement that metadata has `fixed` definition +- Minor fixes to warnings and messages + +## Version 1.3.0 + +This release addresses the Feb. 16 email from Professor Ripley regarding the use +of Boost headers that are not compliant with recent C++ versions. + +- Regarding note "Package in Depends/Imports which should probably only be in LinkingTo: ‘BH’": + +The BH package provides Boost C++ library headers. The BH library is not used in any of the code in /R or /src, but only in the C++ templates that comes with the package (in /inst/cpp). The C++ templates are used when creating a model using the new_ode_model() function, which is then compiled on-the-fly. If the BH package is removed from the Depends field, it won't be installed and hence models cannot be compiled and run. BH cannot be moved to the LinkingTo field. + # PKPDsim 1.1.1 This is the first version of PKPDsim that is released to CRAN. PKPDsim has been diff --git a/cran-comments.md b/cran-comments.md index 7e5eb36..ecce0b9 100755 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,3 +1,21 @@ +## Version 1.4.0 + +This release fixes an issue introduced with an upgrade in Rcpp (1.0.13), as described here: https://github.com/RcppCore/Rcpp/issues/1311. + +Minor other fixes include: +- Fixed the logic regarding a warning about infusion lengths +- Added several example model metadata files, and improve functionality for installing example models +- Ensure that paths with spaces are properly parsed +- Update debugging informational messages +- Make it easier to work with model characteristics +- Make sure infusion length can be used with 'sc' or other non-iv administration types +- Added feature to allow scaling of the infusion duration +- Added feature to calculate AUC pre-ss +- Fix interpolation of time-varying covariates in `pk` blocks. +- Fix regimen_to_nm() conversion function +- Added requirement that metadata has `fixed` definition +- Minor fixes to warnings and messages + ## Version 1.3.0 This release addresses the Feb. 16 email from Professor Ripley regarding the use