_pkgdown.yml

template:
  params:
    bootswatch: simplex
    
development:
  mode: auto     
    
articles:
  - title: "How to run the model"
    contents:
    - 00-intro
    - 01-population
    - 02-tx-seqs
    - 03-structures
    - 04-input-data
    - 05-parameters
    - 06-ips
    - 07-analysis
  - title: "Collaborate"
    contents:
    - how-to-contribute
  - title: "About"
    contents:
    - reproducibility
    - hesim

reference:
  - title: "Model inputs"
    contents:
      - treatments
      - nma
      - acr2das28
      - acr2sdai
      - acr2cdai
      - acr2haq
      - acr2eular
      - eular2haq
      - haq.lprog
      - haq.lcgm
      - ttd
      - ttsi
      - lifetable
      - mort.or
      - mort.hr.haqdif
      - tx.cost
      - hosp.cost
      - mgmt.cost
      - pain
      - utility.mixture
      - utility.wailoo
      - utility.tx.attr
  - title: "Patient population"
    contents:
      - sample_pop
      - get_input_data
  - title: "Sample parameters for PSA"
    contents:
      - sample_pars
      - sample_uniforms
      - sample_normals
      - sample_mvnorm
      - sample_dirichlets
      - sample_gammas
      - sample_survpars
      - sample_pars_utility_mixture
  - title: "Model structure"
    contents:
      - select_model_structures
  - title: "Individual patient simulation"
    contents:
      - sim_iviRA
  - title: "Other useful functions"
    contents:
      - sim_dhaq6
      - sim_utility_mixture
      - sim_utility_wailoo
      - sim_survtime

navbar:
  title: IVI-RA
  left:
  - text: "Tutorial"
    menu:
      - text: "0. Introduction"
        href: articles/00-intro.html
      - text: "1. Generate population"
        href: articles/01-population.html
      - text: "2. Select treatment sequences"
        href: articles/02-tx-seqs.html
      - text: "3. Select model structures"
        href: articles/03-structures.html
      - text: "4. Generate input data"
        href: articles/04-input-data.html
      - text: "5. Sample parameters"
        href: articles/05-parameters.html
      - text: "6. Run simulation"
        href: articles/06-ips.html
      - text: "7. Value assessment"
        href: articles/07-analysis.html
  - text: "API"
    href: reference/index.html
  - text: "Collaborate"
    href: articles/how-to-contribute.html
  - text: "About"
    menu:
      - text: "OSVP"
        href: http://www.thevalueinitiative.org/open-source-value-project/
      - text: "Model description"
        href: model-description/model-description.pdf
      - text: "Release history"
        href:  news/index.html
      - text: "Reproducibility"
        href: articles/reproducibility.html
      - text: "hesim"
        href: articles/hesim.html
  - text: "Web apps"
    menu:
      - text: "IVI-RA Model Interface"
        href: https://ivi-ra-expert.clarityviz.com/
      - text: "IVI-RA Value Tool"
        href: https://ivi-ra.clarityviz.com/