From 576ae2d4850fd55278ded3810ae92ce19a528a1b Mon Sep 17 00:00:00 2001 From: Indrajeet Patil Date: Sat, 11 Apr 2020 20:02:52 +0200 Subject: [PATCH] cran 0.4.0 submission --- CRAN-RELEASE | 4 +-- DESCRIPTION | 21 ++++-------- NAMESPACE | 3 -- NEWS.md | 4 ++- R/helpers_contingency_tabs_expressions.R | 3 +- R/helpers_effsize_ci.R | 1 - R/helpers_meta_analysis_expressions.R | 10 +++--- R/helpers_miscellaneous.R | 2 +- R/helpers_t_test_expressions.R | 19 ++++++----- README.Rmd | 2 +- README.md | 4 +-- codemeta.json | 36 +++++++------------- cran-comments.md | 12 ++----- docs/404.html | 4 +-- docs/CODE_OF_CONDUCT.html | 4 +-- docs/CONTRIBUTING.html | 4 +-- docs/LICENSE-text.html | 4 +-- docs/LICENSE.html | 4 +-- docs/SUPPORT.html | 4 +-- docs/articles/index.html | 4 +-- docs/articles/stats_details.html | 6 ++-- docs/authors.html | 4 +-- docs/index.html | 10 +++--- docs/news/index.html | 11 +++--- docs/pkgdown.yml | 6 ++-- docs/reference/Titanic_full.html | 4 +-- docs/reference/VR_dilemma.html | 4 +-- docs/reference/bugs_long.html | 4 +-- docs/reference/effsize_ci_message.html | 4 +-- docs/reference/expr_anova_bayes.html | 4 +-- docs/reference/expr_anova_nonparametric.html | 4 +-- docs/reference/expr_anova_parametric.html | 4 +-- docs/reference/expr_anova_robust.html | 4 +-- docs/reference/expr_contingency_tab.html | 4 +-- docs/reference/expr_corr_test.html | 4 +-- docs/reference/expr_meta_bayes.html | 8 ++--- docs/reference/expr_meta_parametric.html | 4 +-- docs/reference/expr_meta_robust.html | 4 +-- docs/reference/expr_t_bayes.html | 4 +-- docs/reference/expr_t_nonparametric.html | 4 +-- docs/reference/expr_t_onesample.html | 4 +-- docs/reference/expr_t_parametric.html | 4 +-- docs/reference/expr_t_robust.html | 4 +-- docs/reference/expr_template.html | 4 +-- docs/reference/index.html | 4 +-- docs/reference/intent_morality.html | 4 +-- docs/reference/iris_long.html | 4 +-- docs/reference/movies_long.html | 4 +-- docs/reference/movies_wide.html | 4 +-- docs/reference/reexports.html | 4 +-- docs/reference/t1way_ci.html | 4 +-- docs/reference/yuend_ci.html | 4 +-- tests/testthat/test-expr_meta_parametric.R | 14 ++++---- tests/testthat/test-expr_t_bayes.R | 2 +- tests/testthat/test-expr_t_nonparametric.R | 2 +- 55 files changed, 145 insertions(+), 171 deletions(-) diff --git a/CRAN-RELEASE b/CRAN-RELEASE index 13adc077..c341a570 100644 --- a/CRAN-RELEASE +++ b/CRAN-RELEASE @@ -1,2 +1,2 @@ -This package was submitted to CRAN on 2020-01-29. -Once it is accepted, delete this file and tag the release (commit de42720a84). +This package was submitted to CRAN on 2020-04-11. +Once it is accepted, delete this file and tag the release (commit 1089a38490). diff --git a/DESCRIPTION b/DESCRIPTION index a7a5c9c8..e658a116 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Type: Package Package: statsExpressions Title: Expressions with Statistical Details -Version: 0.4.0.9000 +Version: 0.4.0 Authors@R: person(given = "Indrajeet", family = "Patil", @@ -21,23 +21,22 @@ URL: https://indrajeetpatil.github.io/statsExpressions, BugReports: https://github.com/IndrajeetPatil/statsExpressions/issues Depends: - R (>= 3.5.0) + R (>= 3.6.0) Imports: boot, - broomExtra (>= 2.6.0), - correlation (>= 0.1.1), + broomExtra (>= 3.0.0), + correlation (>= 0.2.0), dplyr, - effectsize (>= 0.2.9.9), + effectsize (>= 0.3.0), ez, - ipmisc (>= 1.3.0), + ipmisc (>= 2.0.0), metafor, metaplus, purrr, rcompanion, rlang, stats, - tibble, - tidyBF (>= 0.1.0.9000), + tidyBF (>= 0.2.0), tidyr, WRS2 Suggests: @@ -48,12 +47,6 @@ Suggests: testthat VignetteBuilder: knitr -Remotes: - easystats/correlation, - easystats/effectsize, - IndrajeetPatil/broomExtra, - IndrajeetPatil/ipmisc, - IndrajeetPatil/tidyBF Encoding: UTF-8 Language: en-US LazyData: true diff --git a/NAMESPACE b/NAMESPACE index f6b2c3ad..888ed0a5 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -57,7 +57,6 @@ importFrom(dplyr,recode) importFrom(dplyr,rename) importFrom(dplyr,rename_all) importFrom(dplyr,select) -importFrom(dplyr,tibble) importFrom(effectsize,cohens_d) importFrom(effectsize,eta_squared) importFrom(effectsize,hedges_g) @@ -110,8 +109,6 @@ importFrom(stats,na.omit) importFrom(stats,oneway.test) importFrom(stats,t.test) importFrom(stats,wilcox.test) -importFrom(tibble,as_tibble) -importFrom(tibble,tribble) importFrom(tidyBF,bf_contingency_tab) importFrom(tidyBF,bf_corr_test) importFrom(tidyBF,bf_meta) diff --git a/NEWS.md b/NEWS.md index eca75bfd..e5aa117f 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# statsExpressions 0.4.0.9000 +# statsExpressions 0.4.0 BREAKING CHANGES @@ -9,6 +9,8 @@ BREAKING CHANGES MAJOR CHANGES + - Minimum R version bumped to `R 3.6.0`. + - Retires the internal `effsize_t_parametric` helper function in favor of relying functions from `effectsize`, which is now added as a dependency. Similarly, `statsExpressions` now relies on `effectsize` to compute effect diff --git a/R/helpers_contingency_tabs_expressions.R b/R/helpers_contingency_tabs_expressions.R index 659e12f6..118b7ed0 100644 --- a/R/helpers_contingency_tabs_expressions.R +++ b/R/helpers_contingency_tabs_expressions.R @@ -40,7 +40,6 @@ #' #' @importFrom dplyr select mutate rename filter #' @importFrom rlang !! enquo as_name ensym exec -#' @importFrom tibble tribble #' @importFrom tidyr uncount drop_na #' @importFrom stats mcnemar.test chisq.test #' @importFrom rcompanion cramerV cohenG cramerVFit @@ -109,7 +108,7 @@ expr_contingency_tab <- function(data, data %<>% dplyr::select(.data = ., {{ x }}, {{ y }}, {{ counts }}) %>% tidyr::drop_na(data = .) %>% - tibble::as_tibble(x = .) + as_tibble(x = .) # x and y need to be factors; drop the unused levels of the factors diff --git a/R/helpers_effsize_ci.R b/R/helpers_effsize_ci.R index 425af005..d74b2d42 100644 --- a/R/helpers_effsize_ci.R +++ b/R/helpers_effsize_ci.R @@ -23,7 +23,6 @@ #' `95%` lower and upper confidence intervals (`0.95`). #' @param ... Currently ignored. #' -#' @importFrom tibble as_tibble #' @importFrom dplyr select contains #' @importFrom boot boot #' @importFrom rlang !! enquo diff --git a/R/helpers_meta_analysis_expressions.R b/R/helpers_meta_analysis_expressions.R index 06bcf9c7..ddd79189 100644 --- a/R/helpers_meta_analysis_expressions.R +++ b/R/helpers_meta_analysis_expressions.R @@ -20,7 +20,7 @@ #' @inheritDotParams metafor::rma -yi -sei -tau2 -level #' #' @importFrom metafor rma -#' @importFrom dplyr rename_all recode mutate tibble +#' @importFrom dplyr rename_all recode mutate #' @importFrom tidyBF meta_data_check #' #' @examples @@ -92,7 +92,7 @@ expr_meta_parametric <- function(data, # create a dataframe with coefficients df_tidy <- coef(summary(meta_res)) %>% - tibble::as_tibble(.) %>% + as_tibble(.) %>% dplyr::rename_all( .tbl = ., .funs = dplyr::recode, @@ -124,7 +124,7 @@ expr_meta_parametric <- function(data, df_glance <- with( data = meta_res, - expr = dplyr::tibble( + expr = tibble( tau2 = tau2, se.tau2 = se.tau2, k = k, @@ -248,8 +248,8 @@ expr_meta_robust <- function(data, df_tidy <- meta_res %>% { dplyr::inner_join( - x = tibble::as_tibble(as.data.frame(.$results), rownames = "term"), - y = tibble::as_tibble(as.data.frame(.$profile@summary@coef), rownames = "term"), + x = as_tibble(as.data.frame(.$results), rownames = "term"), + y = as_tibble(as.data.frame(.$profile@summary@coef), rownames = "term"), by = "term" ) %>% dplyr::rename_all(.tbl = ., .funs = tolower) %>% diff --git a/R/helpers_miscellaneous.R b/R/helpers_miscellaneous.R index 8bc412bc..0f4e1aa9 100644 --- a/R/helpers_miscellaneous.R +++ b/R/helpers_miscellaneous.R @@ -273,7 +273,7 @@ rcompanion_cleaner <- function(object) { if (inherits(object, "list")) object <- object[[1]] # rename columns uniformly - tibble::as_tibble(object) %>% + as_tibble(object) %>% dplyr::rename_all( .tbl = ., .funs = dplyr::recode, diff --git a/R/helpers_t_test_expressions.R b/R/helpers_t_test_expressions.R index e18aa2c4..8cb7edd7 100644 --- a/R/helpers_t_test_expressions.R +++ b/R/helpers_t_test_expressions.R @@ -85,7 +85,7 @@ expr_t_parametric <- function(data, data %<>% dplyr::select(.data = ., {{ x }}, {{ y }}) %>% dplyr::mutate(.data = ., {{ x }} := droplevels(as.factor({{ x }}))) %>% - as_tibble(x = .) + as_tibble(.) # properly removing NAs if it's a paired design if (isTRUE(paired)) { @@ -363,7 +363,6 @@ expr_t_nonparametric <- function(data, #' @importFrom dplyr select #' @importFrom rlang !! enquo #' @importFrom WRS2 yuen yuen.effect.ci -#' @importFrom tibble tribble #' #' @examples #' \donttest{ @@ -422,7 +421,7 @@ expr_t_robust <- function(data, data %<>% dplyr::select(.data = ., {{ x }}, {{ y }}) %>% dplyr::mutate(.data = ., {{ x }} := droplevels(as.factor({{ x }}))) %>% - as_tibble(x = .) + as_tibble(.) # ---------------------------- between-subjects design -------------------- @@ -446,9 +445,10 @@ expr_t_robust <- function(data, # effect size dataframe effsize_df <- - tibble::tribble( - ~estimate, ~conf.low, ~conf.high, - effsize_obj$effsize[[1]], effsize_obj$CI[[1]], effsize_obj$CI[[2]] + tibble( + estimate = effsize_obj$effsize[[1]], + conf.low = effsize_obj$CI[[1]], + conf.high = effsize_obj$CI[[2]] ) # Yuen's test for trimmed means @@ -461,9 +461,10 @@ expr_t_robust <- function(data, # tidying it up stats_df <- - tibble::tribble( - ~statistic, ~parameter, ~p.value, - stats_obj$test[[1]], stats_obj$df[[1]], stats_obj$p.value[[1]] + tibble( + statistic = stats_obj$test[[1]], + parameter = stats_obj$df[[1]], + p.value = stats_obj$p.value[[1]] ) # subtitle parameters diff --git a/README.Rmd b/README.Rmd index ea8dced0..8ed1dc3e 100644 --- a/README.Rmd +++ b/README.Rmd @@ -25,7 +25,7 @@ Package | Status | Usage | GitHub | References ----------------- | ----------------- | ----------------- | ----------------- | ----------------- [![CRAN_Release_Badge](http://www.r-pkg.org/badges/version-ago/statsExpressions)](https://CRAN.R-project.org/package=statsExpressions) | [![Build Status](https://travis-ci.org/IndrajeetPatil/statsExpressions.svg?branch=master)](https://travis-ci.org/IndrajeetPatil/statsExpressions) | [![Daily downloads badge](https://cranlogs.r-pkg.org/badges/last-day/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![GitHub version](https://img.shields.io/badge/GitHub-0.4.0.9000-orange.svg?style=flat-square)](https://github.com/IndrajeetPatil/statsExpressions/) | [![Website](https://img.shields.io/badge/website-statsExpressions-orange.svg?colorB=E91E63)](https://indrajeetpatil.github.io/statsExpressions/) [![CRAN Checks](https://cranchecks.info/badges/summary/statsExpressions)](https://cran.r-project.org/web/checks/check_results_statsExpressions.html) | [![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/IndrajeetPatil/statsExpressions?branch=master&svg=true)](https://ci.appveyor.com/project/IndrajeetPatil/statsExpressions) | [![Weekly downloads 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------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | [![CRAN\_Release\_Badge](http://www.r-pkg.org/badges/version-ago/statsExpressions)](https://CRAN.R-project.org/package=statsExpressions) | [![Build 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[![vignettes](https://img.shields.io/badge/vignettes-0.3.1-orange.svg?colorB=FF5722)](https://CRAN.R-project.org/package=statsExpressions/vignettes/) | +| [![minimal R version](https://img.shields.io/badge/R%3E%3D-3.6.0-6666ff.svg)](https://cran.r-project.org/) | [![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/) | [![Monthly downloads badge](https://cranlogs.r-pkg.org/badges/last-month/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![Github Issues](https://img.shields.io/badge/issues-6-red.svg)](https://github.com/IndrajeetPatil/statsExpressions/issues) | [![vignettes](https://img.shields.io/badge/vignettes-0.4.0-orange.svg?colorB=FF5722)](https://CRAN.R-project.org/package=statsExpressions/vignettes/) | | [![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/IndrajeetPatil/statsExpressions.svg)](https://github.com/IndrajeetPatil/statsExpressions) | [![Coverage Status](https://coveralls.io/repos/github/IndrajeetPatil/statsExpressions/badge.svg?branch=master)](https://coveralls.io/github/IndrajeetPatil/statsExpressions?branch=master) | [![Total downloads badge](https://cranlogs.r-pkg.org/badges/grand-total/statsExpressions?color=blue)](https://CRAN.R-project.org/package=statsExpressions) | [![Github Stars](https://img.shields.io/github/stars/IndrajeetPatil/statsExpressions.svg?style=social&label=Github)](https://github.com/IndrajeetPatil/statsExpressions) | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.2074621.svg)](https://doi.org/10.5281/zenodo.3386122) | -| [![Licence](https://img.shields.io/badge/licence-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html) | [![Codecov test coverage](https://codecov.io/gh/IndrajeetPatil/statsExpressions/branch/master/graph/badge.svg)](https://codecov.io/gh/IndrajeetPatil/statsExpressions?branch=master) | [![Covrpage Summary](https://img.shields.io/badge/covrpage-Last_Build_2020_03_22-yellowgreen.svg)](https://github.com/IndrajeetPatil/statsExpressions/blob/master/tests/README.md) | [![Last-changedate](https://img.shields.io/badge/last%20change-2020--04--08-yellowgreen.svg)](https://github.com/IndrajeetPatil/statsExpressions/commits/master) | [![GitHub last commit](https://img.shields.io/github/last-commit/IndrajeetPatil/statsExpressions.svg)](https://github.com/IndrajeetPatil/statsExpressions/commits/master) | +| [![Licence](https://img.shields.io/badge/licence-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html) | [![Codecov test coverage](https://codecov.io/gh/IndrajeetPatil/statsExpressions/branch/master/graph/badge.svg)](https://codecov.io/gh/IndrajeetPatil/statsExpressions?branch=master) | [![Covrpage Summary](https://img.shields.io/badge/covrpage-Last_Build_2020_03_22-yellowgreen.svg)](https://github.com/IndrajeetPatil/statsExpressions/blob/master/tests/README.md) | [![Last-changedate](https://img.shields.io/badge/last%20change-2020--04--11-yellowgreen.svg)](https://github.com/IndrajeetPatil/statsExpressions/commits/master) | [![GitHub last commit](https://img.shields.io/github/last-commit/IndrajeetPatil/statsExpressions.svg)](https://github.com/IndrajeetPatil/statsExpressions/commits/master) | | [![status](https://tinyverse.netlify.com/badge/statsExpressions)](https://CRAN.R-project.org/package=statsExpressions) | [![R build status](https://github.com/IndrajeetPatil/statsExpressions/workflows/R-CMD-check/badge.svg)](https://github.com/IndrajeetPatil/statsExpressions) | [![Gitter chat](https://badges.gitter.im/gitterHQ/gitter.png)](https://gitter.im/statsExpressions/community) | [![Project Status](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) | [![contributions welcome](https://img.shields.io/badge/contributions-welcome-brightgreen.svg?style=flat)](https://github.com/IndrajeetPatil/statsExpressions/issues) | # Introduction diff --git a/codemeta.json b/codemeta.json index 0bfd8ef4..7f2b32ab 100644 --- a/codemeta.json +++ b/codemeta.json @@ -16,7 +16,7 @@ ], "issueTracker": "\n https://github.com/IndrajeetPatil/statsExpressions/issues", "license": "https://spdx.org/licenses/GPL-3.0", - "version": "0.4.0.9000", + "version": "0.4.0", "programmingLanguage": { "@type": "ComputerLanguage", "name": "R", @@ -120,7 +120,7 @@ "@type": "SoftwareApplication", "identifier": "R", "name": "R", - "version": ">= 3.5.0" + "version": ">= 3.6.0" }, { "@type": "SoftwareApplication", @@ -138,27 +138,27 @@ "@type": "SoftwareApplication", "identifier": "broomExtra", "name": "broomExtra", - "version": ">= 2.6.0", + "version": ">= 3.0.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", "name": "Comprehensive R Archive Network (CRAN)", "url": "https://cran.r-project.org" }, - "sameAs": "https://github.com/IndrajeetPatil/broomExtra" + "sameAs": "https://CRAN.R-project.org/package=broomExtra" }, { "@type": "SoftwareApplication", "identifier": "correlation", "name": "correlation", - "version": ">= 0.1.1", + "version": ">= 0.2.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", "name": "Comprehensive R Archive Network (CRAN)", "url": "https://cran.r-project.org" }, - "sameAs": "https://github.com/easystats/correlation" + "sameAs": "https://CRAN.R-project.org/package=correlation" }, { "@type": "SoftwareApplication", @@ -176,14 +176,14 @@ "@type": "SoftwareApplication", "identifier": "effectsize", "name": "effectsize", - "version": ">= 0.2.9.9", + "version": ">= 0.3.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", "name": "Comprehensive R Archive Network (CRAN)", "url": "https://cran.r-project.org" }, - "sameAs": "https://github.com/easystats/effectsize" + "sameAs": "https://CRAN.R-project.org/package=effectsize" }, { "@type": "SoftwareApplication", @@ -201,14 +201,14 @@ "@type": "SoftwareApplication", "identifier": "ipmisc", "name": "ipmisc", - "version": ">= 1.3.0", + "version": ">= 2.0.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", "name": "Comprehensive R Archive Network (CRAN)", "url": "https://cran.r-project.org" }, - "sameAs": "https://github.com/IndrajeetPatil/ipmisc" + "sameAs": "https://CRAN.R-project.org/package=ipmisc" }, { "@type": "SoftwareApplication", @@ -275,30 +275,18 @@ "identifier": "stats", "name": "stats" }, - { - "@type": "SoftwareApplication", - "identifier": "tibble", - "name": "tibble", - "provider": { - "@id": "https://cran.r-project.org", - "@type": "Organization", - "name": "Comprehensive R Archive Network (CRAN)", - "url": "https://cran.r-project.org" - }, - "sameAs": "https://CRAN.R-project.org/package=tibble" - }, { "@type": "SoftwareApplication", "identifier": "tidyBF", "name": "tidyBF", - "version": ">= 0.1.0.9000", + "version": ">= 0.2.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", "name": "Comprehensive R Archive Network (CRAN)", "url": "https://cran.r-project.org" }, - "sameAs": "https://github.com/IndrajeetPatil/tidyBF" + "sameAs": "https://CRAN.R-project.org/package=tidyBF" }, { "@type": "SoftwareApplication", diff --git a/cran-comments.md b/cran-comments.md index d1a2b37f..7522069c 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,16 +1,10 @@ ## Test environments -* local Windows install, R 3.6.2 +* local Windows install, R 4.0.0 * ubuntu 14.04 on travis-ci (devel and release) * win-builder on appveyor (devel and release) ## R CMD check results -0 errors | 0 warnings | 1 note +0 errors | 0 warnings | 0 note - - This is the 7th update in the past 6 months because the package belongs to - an ecosystem of packages which are all being simultaneously updated to - reduce dependency load for each package. - - In particular, the current update reduces the number of `Imports` for the - `ggstatsplot` package to less than 20. This fixes a new `NOTE` recently - implemented in `r-devel-linux-x86_64-fedora-clang`. + - Maintenanace and internal refactoring. diff --git a/docs/404.html b/docs/404.html index 6457ec59..273409a7 100644 --- a/docs/404.html +++ b/docs/404.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -159,7 +159,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html index 29480c55..9073e990 100644 --- a/docs/CODE_OF_CONDUCT.html +++ b/docs/CODE_OF_CONDUCT.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -167,7 +167,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html index e17debce..2fabec41 100644 --- a/docs/CONTRIBUTING.html +++ b/docs/CONTRIBUTING.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -204,7 +204,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index a8edf672..4f8ef086 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -161,7 +161,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/LICENSE.html b/docs/LICENSE.html index c9eabfc6..106941aa 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -381,7 +381,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/SUPPORT.html b/docs/SUPPORT.html index a48910c8..f790c5f9 100644 --- a/docs/SUPPORT.html +++ b/docs/SUPPORT.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -174,7 +174,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/articles/index.html b/docs/articles/index.html index cf73e6e9..a9d129c7 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -158,7 +158,7 @@

All vignettes

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/articles/stats_details.html b/docs/articles/stats_details.html index f6de7afd..e7bae181 100644 --- a/docs/articles/stats_details.html +++ b/docs/articles/stats_details.html @@ -34,7 +34,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -94,7 +94,7 @@

Test and effect size details

Indrajeet Patil

-

2020-04-08

+

2020-04-11

Source: vignettes/stats_details.Rmd @@ -984,7 +984,7 @@

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/authors.html b/docs/authors.html index 26d4c5c5..caf422ed 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -175,7 +175,7 @@

Authors

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/index.html b/docs/index.html index c2aeb474..abe6b3c9 100644 --- a/docs/index.html +++ b/docs/index.html @@ -39,7 +39,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -130,11 +130,11 @@ Features -minimal R version +minimal R version lifecycle Monthly downloads badge Github Issues -vignettes +vignettes GitHub code size in bytes @@ -147,7 +147,7 @@ Licence Codecov test coverage Covrpage Summary -Last-changedate +Last-changedate GitHub last commit @@ -658,7 +658,7 @@

Developers

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/news/index.html b/docs/news/index.html index c7bd0b95..58758024 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -79,7 +79,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -140,9 +140,9 @@

Changelog

Source: NEWS.md -
-

-statsExpressions 0.4.0.9000 Unreleased +
+

+statsExpressions 0.4.0 Unreleased

BREAKING CHANGES

    @@ -151,6 +151,7 @@

MAJOR CHANGES

    +

  • Minimum R version bumped to R 3.6.0.

  • Retires the internal effsize_t_parametric helper function in favor of relying functions from effectsize, which is now added as a dependency. Similarly, statsExpressions now relies on effectsize to compute effect sizes for ANOVA designs, instead of sjstats.

  • For parametric t-tests and ANOVAs, confidence intervals for effect sizes are estimated using the noncentrality parameter method. Centrality-based methods are deprecated.

  • Correlation analysis is carried out using correlation package, which is now added as a dependency.

    • @@ -255,7 +256,7 @@

    Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index ae338572..a92d4e99 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,9 +1,9 @@ pandoc: 2.9.2.1 -pkgdown: 1.5.0.9000 -pkgdown_sha: cb9866146685f6924b67c2b95a97a9637e934714 +pkgdown: 1.5.1 +pkgdown_sha: ~ articles: stats_details: stats_details.html -last_built: 2020-04-08T11:09Z +last_built: 2020-04-11T18:00Z urls: reference: https://indrajeetpatil.github.io/statsExpressions//reference article: https://indrajeetpatil.github.io/statsExpressions//articles diff --git a/docs/reference/Titanic_full.html b/docs/reference/Titanic_full.html index d4596507..4040ead6 100644 --- a/docs/reference/Titanic_full.html +++ b/docs/reference/Titanic_full.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0

@@ -200,7 +200,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/VR_dilemma.html b/docs/reference/VR_dilemma.html index 701f7639..6b5808e6 100644 --- a/docs/reference/VR_dilemma.html +++ b/docs/reference/VR_dilemma.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -206,7 +206,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/bugs_long.html b/docs/reference/bugs_long.html index ebd79bb8..3bfe26f5 100644 --- a/docs/reference/bugs_long.html +++ b/docs/reference/bugs_long.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -207,7 +207,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/effsize_ci_message.html b/docs/reference/effsize_ci_message.html index 49b7e48a..11b9e410 100644 --- a/docs/reference/effsize_ci_message.html +++ b/docs/reference/effsize_ci_message.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -179,7 +179,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/expr_anova_bayes.html b/docs/reference/expr_anova_bayes.html index bcd7c95b..7262eb00 100644 --- a/docs/reference/expr_anova_bayes.html +++ b/docs/reference/expr_anova_bayes.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -241,7 +241,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/expr_anova_nonparametric.html b/docs/reference/expr_anova_nonparametric.html index 8c4f71b3..ec3f42a2 100644 --- a/docs/reference/expr_anova_nonparametric.html +++ b/docs/reference/expr_anova_nonparametric.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -283,7 +283,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/expr_anova_parametric.html b/docs/reference/expr_anova_parametric.html index fd974d9f..2029c162 100644 --- a/docs/reference/expr_anova_parametric.html +++ b/docs/reference/expr_anova_parametric.html @@ -81,7 +81,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -312,7 +312,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/expr_anova_robust.html b/docs/reference/expr_anova_robust.html index 89b6344a..3d021996 100644 --- a/docs/reference/expr_anova_robust.html +++ b/docs/reference/expr_anova_robust.html @@ -83,7 +83,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -305,7 +305,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/expr_contingency_tab.html b/docs/reference/expr_contingency_tab.html index 7998db89..bb938d7e 100644 --- a/docs/reference/expr_contingency_tab.html +++ b/docs/reference/expr_contingency_tab.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -337,7 +337,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/expr_corr_test.html b/docs/reference/expr_corr_test.html index 7b9534bf..b7efba01 100644 --- a/docs/reference/expr_corr_test.html +++ b/docs/reference/expr_corr_test.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -285,7 +285,7 @@

Contents

-

Site built with pkgdown 1.5.0.9000.

+

Site built with pkgdown 1.5.1.

diff --git a/docs/reference/expr_meta_bayes.html b/docs/reference/expr_meta_bayes.html index 16977754..4ca0e71f 100644 --- a/docs/reference/expr_meta_bayes.html +++ b/docs/reference/expr_meta_bayes.html @@ -80,7 +80,7 @@ statsExpressions - 0.4.0.9000 + 0.4.0 @@ -226,8 +226,8 @@

Examp 
# \donttest{
 # setup
 set.seed(123)
-library(metaplus)
#> 
-#> Note: The second parameter is the study standard error not the standard error squared as in the metafor package.

+library(metaplus)
+
 # renaming to what `statsExpressions` expects
 df <- dplyr::rename(mag, estimate = yi, std.error = sei)
 
@@ -259,7 +259,7 @@ 
Contents

 

 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_meta_parametric.html b/docs/reference/expr_meta_parametric.html
index 4c0879d7..2d43bd83 100644
--- a/docs/reference/expr_meta_parametric.html
+++ b/docs/reference/expr_meta_parametric.html
@@ -83,7 +83,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -311,7 +311,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_meta_robust.html b/docs/reference/expr_meta_robust.html
index 89837499..96b6655a 100644
--- a/docs/reference/expr_meta_robust.html
+++ b/docs/reference/expr_meta_robust.html
@@ -83,7 +83,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -227,7 +227,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_t_bayes.html b/docs/reference/expr_t_bayes.html
index 07a57fad..4d1b617f 100644
--- a/docs/reference/expr_t_bayes.html
+++ b/docs/reference/expr_t_bayes.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -237,7 +237,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_t_nonparametric.html b/docs/reference/expr_t_nonparametric.html
index 1fc2c1ea..1c0ceb8b 100644
--- a/docs/reference/expr_t_nonparametric.html
+++ b/docs/reference/expr_t_nonparametric.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -328,7 +328,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_t_onesample.html b/docs/reference/expr_t_onesample.html
index c519ef61..212c4cae 100644
--- a/docs/reference/expr_t_onesample.html
+++ b/docs/reference/expr_t_onesample.html
@@ -83,7 +83,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -323,7 +323,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_t_parametric.html b/docs/reference/expr_t_parametric.html
index efdd776c..e45740bf 100644
--- a/docs/reference/expr_t_parametric.html
+++ b/docs/reference/expr_t_parametric.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -291,7 +291,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_t_robust.html b/docs/reference/expr_t_robust.html
index 248ee52b..f2c2d3fc 100644
--- a/docs/reference/expr_t_robust.html
+++ b/docs/reference/expr_t_robust.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -295,7 +295,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/expr_template.html b/docs/reference/expr_template.html
index 071a910e..6f54aaf6 100644
--- a/docs/reference/expr_template.html
+++ b/docs/reference/expr_template.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -294,7 +294,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 390c9ec3..020b5691 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -79,7 +79,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -431,7 +431,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/intent_morality.html b/docs/reference/intent_morality.html
index 7a7a7128..5e14a2a9 100644
--- a/docs/reference/intent_morality.html
+++ b/docs/reference/intent_morality.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -220,7 +220,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/iris_long.html b/docs/reference/iris_long.html
index d98f6dfd..774ded2c 100644
--- a/docs/reference/iris_long.html
+++ b/docs/reference/iris_long.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -207,7 +207,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/movies_long.html b/docs/reference/movies_long.html
index bde5d8bc..aa53c05f 100644
--- a/docs/reference/movies_long.html
+++ b/docs/reference/movies_long.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -222,7 +222,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/movies_wide.html b/docs/reference/movies_wide.html
index 4c6e462a..9e072066 100644
--- a/docs/reference/movies_wide.html
+++ b/docs/reference/movies_wide.html
@@ -80,7 +80,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -229,7 +229,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/reexports.html b/docs/reference/reexports.html
index 543a0a92..3fe9a518 100644
--- a/docs/reference/reexports.html
+++ b/docs/reference/reexports.html
@@ -89,7 +89,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -182,7 +182,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/t1way_ci.html b/docs/reference/t1way_ci.html
index 3f76798d..0743ad89 100644
--- a/docs/reference/t1way_ci.html
+++ b/docs/reference/t1way_ci.html
@@ -83,7 +83,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -239,7 +239,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/docs/reference/yuend_ci.html b/docs/reference/yuend_ci.html
index 125eda0b..905fb06c 100644
--- a/docs/reference/yuend_ci.html
+++ b/docs/reference/yuend_ci.html
@@ -83,7 +83,7 @@
       
       
         statsExpressions
-        0.4.0.9000
+        0.4.0
       
     
 
@@ -247,7 +247,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.5.0.9000.

+  
Site built with pkgdown 1.5.1.

 

 
       
diff --git a/tests/testthat/test-expr_meta_parametric.R b/tests/testthat/test-expr_meta_parametric.R
index fe842308..e7c2fc92 100644
--- a/tests/testthat/test-expr_meta_parametric.R
+++ b/tests/testthat/test-expr_meta_parametric.R
@@ -7,13 +7,13 @@ testthat::test_that(
 
     # dataframe
     df_eg <-
-      tibble::tribble(
-        ~estimate, ~std.error,
-        0.111, 0.05,
-        0.245, 0.111,
-        0.8, 0.001,
-        1.1, 0.2,
-        0.03, 0.01
+      structure(
+        list(
+          estimate = c(0.111, 0.245, 0.8, 1.1, 0.03),
+          std.error = c(0.05, 0.111, 0.001, 0.2, 0.01)
+        ),
+        row.names = c(NA, -5L),
+        class = c("tbl_df", "tbl", "data.frame")
       )
 
     # subtitle output
diff --git a/tests/testthat/test-expr_t_bayes.R b/tests/testthat/test-expr_t_bayes.R
index de2bceb3..a78018e2 100644
--- a/tests/testthat/test-expr_t_bayes.R
+++ b/tests/testthat/test-expr_t_bayes.R
@@ -115,7 +115,7 @@ testthat::test_that(
 
     # converting to long format
     df_bird %<>%
-      tibble::as_tibble(x = .) %>%
+      as_tibble(x = .) %>%
       tidyr::gather(
         data = .,
         key = "type",
diff --git a/tests/testthat/test-expr_t_nonparametric.R b/tests/testthat/test-expr_t_nonparametric.R
index e0464c7f..cede7abb 100644
--- a/tests/testthat/test-expr_t_nonparametric.R
+++ b/tests/testthat/test-expr_t_nonparametric.R
@@ -85,7 +85,7 @@ testthat::test_that(
 
     # converting to long format
     df_bird %<>%
-      tibble::as_tibble(x = .) %>%
+      as_tibble(x = .) %>%
       tidyr::gather(
         data = .,
         key = "type",