.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/
docs/source/_autosummary
docs/source/_toctree

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# VScode project settings
.vscode

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/


# Temporary files
*~

# snakemake
.snakemake

# files that are needed for fixture creation and tests temp files
tests/fixtures/envs/environment.yaml
tests/fixtures/integration/convert_Bos2016_data/results.h5
tests/fixtures/integration/data/network.h5
tests/fixtures/integration/make_Bos2016_data/meanfield/kummers_function.pyf

# output of example scripts
examples/response_nonlinearities/response_nonlinearities.pdf
examples/bos2016/figures/power_spectra_Bos2016.png
examples/bos2016/figures/eigenvalue_trajectories_Bos2016.png
examples/bos2016/figures/sensitivity_measure_low_gamma_Bos2016.png
examples/bos2016/figures/sensitivity_measure_high_gamma_Bos2016.png
examples/bos2016/power_spectra_of_subcircuits_Bos2016.png
examples/schuecker2015/*.eps
docs/source/auto_examples
examples/binary_rate_simulation/*.png