From 18fb610e66ec9e0093619c5f56b28a2e02b13737 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Thu, 29 Feb 2024 12:51:45 +0100 Subject: [PATCH 01/43] Use ruff instead of black and flake8 --- pyproject.toml | 46 +++++++++++++++++++++++++++++++++ tests/test_feature_aggregate.py | 2 +- 2 files changed, 47 insertions(+), 1 deletion(-) create mode 100644 pyproject.toml diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 000000000..e8cadf14d --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,46 @@ +[tool.ruff] +# Exclude a variety of commonly ignored directories. +exclude = [ + ".git", + ".ipynb_checkpoints", + ".mypy_cache", + ".pytest_cache", + ".pytype", + ".ruff_cache", + ".venv", + ".vscode", + "__pypackages__", + "site-packages", + "venv", +] +extend-include = ["*.ipynb"] + +# Same as Black. +line-length = 88 + + +[tool.ruff.lint] +select = ["C9", "E", "F", "I", "W"] +ignore = ["B008"] + +[tool.ruff.lint.per-file-ignores] +"__init__.py" = ["F401"] + + +[tool.ruff.format] +# Enable auto-formatting of code examples in docstrings. Markdown, +# reStructuredText code/literal blocks and doctests are all supported. +# +# This is currently disabled by default, but it is planned for this +# to be opt-out in the future. +docstring-code-format = true + +# Set the line length limit used when formatting code snippets in +# docstrings. +# +# This only has an effect when the `docstring-code-format` setting is +# enabled. +docstring-code-line-length = "dynamic" + +[tool.ruff.lint.mccabe] +max-complexity = 10 \ No newline at end of file diff --git a/tests/test_feature_aggregate.py b/tests/test_feature_aggregate.py index f0a5f0a61..734765002 100644 --- a/tests/test_feature_aggregate.py +++ b/tests/test_feature_aggregate.py @@ -401,7 +401,7 @@ def test_aggregate_region_with_weights_inconsistent_index( def test_aggregate_region_with_weights_raises(simple_df): # carbon price shouldn't be summed but be weighted by emissions v = "Price|Carbon" - w = "Emissions|CO2" + # w = "Emissions|CO2" # using weight and method other than 'sum' raises an error pytest.raises(ValueError, simple_df.aggregate_region, v, method="max", weight=w) From 7a2a5d2a90fe13b62e2cb6f643993d0c63c6866e Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Thu, 29 Feb 2024 14:00:41 +0100 Subject: [PATCH 02/43] Remove Python update from docs --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 11443f1be..141271037 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ pyam: analysis & visualization
of integrated-assessment and macro-energy [![Code style: ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) -[![python](https://img.shields.io/badge/python-≥3.10,<3.13-blue?logo=python&logoColor=white)](https://github.com/IAMconsortium/pyam) +[![python](https://img.shields.io/badge/python-≥3.10,<3.12-blue?logo=python&logoColor=white)](https://github.com/IAMconsortium/pyam) [![pytest](https://img.shields.io/github/actions/workflow/status/iamconsortium/pyam/pytest.yml?logo=GitHub&label=pytest)](https://github.com/IAMconsortium/pyam/actions/workflows/pytest.yml) [![ReadTheDocs](https://readthedocs.org/projects/pyam-iamc/badge/?version=latest)](https://pyam-iamc.readthedocs.io/en/latest/?badge=latest) [![codecov](https://codecov.io/gh/IAMconsortium/pyam/branch/main/graph/badge.svg)](https://codecov.io/gh/IAMconsortium/pyam) From a678649a2a683d7c3a1ebfdf9276c6311986a0bb Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 09:23:40 +0100 Subject: [PATCH 03/43] Adapt test_feature_aggregate as suggested --- tests/test_feature_aggregate.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/test_feature_aggregate.py b/tests/test_feature_aggregate.py index 734765002..f0a5f0a61 100644 --- a/tests/test_feature_aggregate.py +++ b/tests/test_feature_aggregate.py @@ -401,7 +401,7 @@ def test_aggregate_region_with_weights_inconsistent_index( def test_aggregate_region_with_weights_raises(simple_df): # carbon price shouldn't be summed but be weighted by emissions v = "Price|Carbon" - # w = "Emissions|CO2" + w = "Emissions|CO2" # using weight and method other than 'sum' raises an error pytest.raises(ValueError, simple_df.aggregate_region, v, method="max", weight=w) From bc432476df2ecfd0dee2ce3417c30ac8dd1a8747 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 10:51:40 +0100 Subject: [PATCH 04/43] Migrate pyproject.toml to ruff.toml --- pyproject.toml | 46 ---------------------------------------------- 1 file changed, 46 deletions(-) delete mode 100644 pyproject.toml diff --git a/pyproject.toml b/pyproject.toml deleted file mode 100644 index e8cadf14d..000000000 --- a/pyproject.toml +++ /dev/null @@ -1,46 +0,0 @@ -[tool.ruff] -# Exclude a variety of commonly ignored directories. -exclude = [ - ".git", - ".ipynb_checkpoints", - ".mypy_cache", - ".pytest_cache", - ".pytype", - ".ruff_cache", - ".venv", - ".vscode", - "__pypackages__", - "site-packages", - "venv", -] -extend-include = ["*.ipynb"] - -# Same as Black. -line-length = 88 - - -[tool.ruff.lint] -select = ["C9", "E", "F", "I", "W"] -ignore = ["B008"] - -[tool.ruff.lint.per-file-ignores] -"__init__.py" = ["F401"] - - -[tool.ruff.format] -# Enable auto-formatting of code examples in docstrings. Markdown, -# reStructuredText code/literal blocks and doctests are all supported. -# -# This is currently disabled by default, but it is planned for this -# to be opt-out in the future. -docstring-code-format = true - -# Set the line length limit used when formatting code snippets in -# docstrings. -# -# This only has an effect when the `docstring-code-format` setting is -# enabled. -docstring-code-line-length = "dynamic" - -[tool.ruff.lint.mccabe] -max-complexity = 10 \ No newline at end of file From dcf09dc901191ba3456823de0d7332d5ecd410b9 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Thu, 29 Feb 2024 12:57:00 +0100 Subject: [PATCH 05/43] Update README badge for python3.12 --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 141271037..11443f1be 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ pyam: analysis & visualization
of integrated-assessment and macro-energy [![Code style: ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) -[![python](https://img.shields.io/badge/python-≥3.10,<3.12-blue?logo=python&logoColor=white)](https://github.com/IAMconsortium/pyam) +[![python](https://img.shields.io/badge/python-≥3.10,<3.13-blue?logo=python&logoColor=white)](https://github.com/IAMconsortium/pyam) [![pytest](https://img.shields.io/github/actions/workflow/status/iamconsortium/pyam/pytest.yml?logo=GitHub&label=pytest)](https://github.com/IAMconsortium/pyam/actions/workflows/pytest.yml) [![ReadTheDocs](https://readthedocs.org/projects/pyam-iamc/badge/?version=latest)](https://pyam-iamc.readthedocs.io/en/latest/?badge=latest) [![codecov](https://codecov.io/gh/IAMconsortium/pyam/branch/main/graph/badge.svg)](https://codecov.io/gh/IAMconsortium/pyam) From d797c6454e9fb8abdf8387c09f2fca215160b262 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 11:52:41 +0100 Subject: [PATCH 06/43] Add first version of pyproject.toml --- pyproject.toml | 100 +++++++++++++++++++++++++++++++++++++++++++++++++ ruff.toml | 45 ---------------------- 2 files changed, 100 insertions(+), 45 deletions(-) create mode 100644 pyproject.toml delete mode 100644 ruff.toml diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 000000000..b12abdc91 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,100 @@ +[tool.poetry] +name = "pyam-iamc" +version = "0.0.0" +description = "Analysis & visualization of integrated-assessment scenarios" +authors = [ + "Matthew Gidden `@gidden ", + "Daniel Huppmann ", + "Zebedee Nicholls ", + "Nikolay Kushin ", + "Robin Lamboll ", + "Oliver Fricko ", + "Jonas Hörsch ", + "Paul Natsuo Kishimoto ", + "Thorsten Burandt ", + "Ross Ursino ", + "Maik Budzinski ", + "Jarmo Kikstra ", + "Michael Pimmer ", + "Patrick Jürgens ", + "Florian Maczek ", + "Laura Wienpahl ", + "Philip Hackstock ", + "Pietro Monticone ", + "Edward Byers ", + "Fridolin Glatter ", +] +license = "Apache-2.0" +readme = "README.md" + +[tool.poetry.dependencies] +python = "^3.10" +iam-units = ">=2020.4.21" +ixmp4 = ">=0.7.1" +numpy = ">=1.23.0" +openpyxl = "^3.1.2" +pandas = ">=2.0.0" +Pint = ">=0.13" +PyYAML = "^6.0.1" +matplotlib = ">=3.6.0" +scipy = ">=1.10.0" +seaborn = ">=0.11" +six = "^1.16.0" +setuptools = ">=69" +setuptools-scm = "^8.0.4" +wquantiles = "^0.6" +XlsxWriter = "^3.2.0" + +[tool.poetry.group.dev.dependencies] +ruff = ">=0.2.1" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + +[tool.ruff] +# Exclude a variety of commonly ignored directories. +exclude = [ + ".git", + ".ipynb_checkpoints", + ".mypy_cache", + ".pytest_cache", + ".pytype", + ".ruff_cache", + ".venv", + ".vscode", + "__pypackages__", + "site-packages", + "venv", +] +extend-include = ["*.ipynb"] + +# Same as Black. +line-length = 88 + + +[tool.ruff.lint] +select = ["C9", "E", "F", "I", "W"] +ignore = ["B008"] + +[tool.ruff.lint.per-file-ignores] +"__init__.py" = ["F401"] + + +[tool.ruff.format] +# Enable auto-formatting of code examples in docstrings. Markdown, +# reStructuredText code/literal blocks and doctests are all supported. +# +# This is currently disabled by default, but it is planned for this +# to be opt-out in the future. +docstring-code-format = true + +# Set the line length limit used when formatting code snippets in +# docstrings. +# +# This only has an effect when the `docstring-code-format` setting is +# enabled. +docstring-code-line-length = "dynamic" + +[tool.ruff.lint.mccabe] +max-complexity = 10 diff --git a/ruff.toml b/ruff.toml deleted file mode 100644 index 5983f22f4..000000000 --- a/ruff.toml +++ /dev/null @@ -1,45 +0,0 @@ -# Exclude a variety of commonly ignored directories. -exclude = [ - ".git", - ".ipynb_checkpoints", - ".mypy_cache", - ".pytest_cache", - ".pytype", - ".ruff_cache", - ".venv", - ".vscode", - "__pypackages__", - "site-packages", - "venv", -] -extend-include = ["*.ipynb"] - -# Same as Black. -line-length = 88 - - -[lint] -select = ["C9", "E", "F", "I", "W"] -ignore = ["B008"] - -[lint.per-file-ignores] -"__init__.py" = ["F401"] - - -[format] -# Enable auto-formatting of code examples in docstrings. Markdown, -# reStructuredText code/literal blocks and doctests are all supported. -# -# This is currently disabled by default, but it is planned for this -# to be opt-out in the future. -docstring-code-format = true - -# Set the line length limit used when formatting code snippets in -# docstrings. -# -# This only has an effect when the `docstring-code-format` setting is -# enabled. -docstring-code-line-length = "dynamic" - -[lint.mccabe] -max-complexity = 10 \ No newline at end of file From 23754609d0817a0d703a6f5227844f58681d2a89 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 12:49:52 +0100 Subject: [PATCH 07/43] Add dynamic-versioning plugin --- pyproject.toml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/pyproject.toml b/pyproject.toml index b12abdc91..f9be9b3dc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -98,3 +98,8 @@ docstring-code-line-length = "dynamic" [tool.ruff.lint.mccabe] max-complexity = 10 + +[tool.poetry-dynamic-versioning] +enable = true +style = "pep440" +vcs = "git" From 0ee62a3574f22c02e72217b3b9dc07186cc3e722 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 13:45:09 +0100 Subject: [PATCH 08/43] Migrate setup.py and setup.cfg completely --- pyproject.toml | 77 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 77 insertions(+) diff --git a/pyproject.toml b/pyproject.toml index f9be9b3dc..3d44f66de 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,8 +26,33 @@ authors = [ ] license = "Apache-2.0" readme = "README.md" +repository = "https://github.com/IAMconsortium/pyam" +documentation = "https://pyam-iamc.readthedocs.io" +classifiers = [ + "Development Status :: 5 - Production/Stable", + "Intended Audience :: Science/Research", + "Topic :: Scientific/Engineering", + "Natural Language :: English", + "Programming Language :: Python", +] + +# TODO figure out how and when to print the following with poetry: +# # Thanks to http://patorjk.com/software/taag/ +# logo = r""" +# ______ __ __ ______ __ __ +# /\ == \ /\ \_\ \ /\ __ \ /\ "-./ \ +# \ \ _-/ \ \____ \ \ \ __ \ \ \ \-./\ \ +# \ \_\ \/\_____\ \ \_\ \_\ \ \_\ \ \_\ +# \/_/ \/_____/ \/_/\/_/ \/_/ \/_/ +# """ +# NOTE TO DEVS +# If you change a minimum version below, please explicitly implement the change +# in our minimum-reqs test in the file ./.github/workflows/pytest-dependency.yml +# Please also add a section "Dependency changes" to the release notes [tool.poetry.dependencies] +# httpx[http2] included via ixmp4 +# requests included via ixmp4 python = "^3.10" iam-units = ">=2020.4.21" ixmp4 = ">=0.7.1" @@ -45,9 +70,61 @@ setuptools-scm = "^8.0.4" wquantiles = "^0.6" XlsxWriter = "^3.2.0" +[tool.poetry.group.dev] +optional = true + [tool.poetry.group.dev.dependencies] ruff = ">=0.2.1" +[tool.poetry.group.docs] +optional = true + +[tool.poetry.group.docs.dependencies] +# docs requires 'tutorials' +autodocsum = "^0.2.12" +kaleido = "^0.2.1" +nbsphinx = "^0.9.3" +numpydocs = "^1.6.0" +pillow = "^10.2.0" +sphinx = "^7.2.6" +sphinx-gallery = "^0.15.0" + +[tool.poetry.group.optional_io_formats] +optional = true + +[tool.poetry.group.optional_io_formats.dependencies] +datapackage = "^1.15.2" +pandas-datareader = "^0.10.0" +unfccc_di_api = ">=3.0.1" +xlrd = "^2.0.1" + +[tool.poetry.group.optional_plotting] +optional = true + +[tool.poetry.group.optional_plotting.dependencies] +plotly = "^5.19.0" + +[tool.poetry.group.tests] +optional = true + +[tool.poetry.group.tests.dependencies] +coverage = "^6.5.0" +coveralls = "^3.3.1" +pytest = "^8.0.2" +pytest-cov = "^4.1.0" +pytest-mpl = "^0.17.0" + +[tool.poetry.group.tutorials] +optional = true + +[tool.poetry.group.tutorials.dependencies] +ipykernel = "^6.29.3" +jupyter_client = "^8.6.0" +nbconvert = ">= 7.3" +nbformat = "^5.9.2" +pypandoc = "^1.13" + + [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" From 27672a96a1c1b40fc56e402106efc18b89888c06 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 13:45:36 +0100 Subject: [PATCH 09/43] Remove setup.cfg and setup.py --- setup.cfg | 80 ------------------------------------------------------- setup.py | 13 --------- 2 files changed, 93 deletions(-) delete mode 100644 setup.cfg delete mode 100755 setup.py diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 1c888a213..000000000 --- a/setup.cfg +++ /dev/null @@ -1,80 +0,0 @@ -[metadata] -name = pyam-iamc -author = file: AUTHORS.rst -license = Apache Software License 2.0 -description = Analysis & visualization of integrated-assessment scenarios -long_description = file: README.md -long_description_content_type = text/markdown -url = https://github.com/IAMconsortium/pyam -project_urls = - Documentation = https://pyam-iamc.readthedocs.io -classifiers = - Development Status :: 5 - Production/Stable - Intended Audience :: Science/Research - Topic :: Scientific/Engineering - License :: OSI Approved :: Apache Software License - Natural Language :: English - Programming Language :: Python :: 3 - -[options] -packages = pyam -include_package_data = True -python_requires = >=3.10, <3.13 - -# NOTE TO DEVS -# If you change a minimum version below, please explicitly implement the change -# in our minimum-reqs test in the file ./.github/workflows/pytest-dependency.yml -# Please also add a section "Dependency changes" to the release notes -install_requires = - iam-units >= 2020.4.21 - ixmp4 >= 0.7.1 - numpy >= 1.23.0 -# requests included via ixmp4 -# httpx[http2] included via ixmp4 - openpyxl - pandas >= 2.0.0 - pint >= 0.13 - PyYAML - matplotlib >= 3.6.0 - scipy >= 1.10.0 - seaborn >= 0.11 - six - setuptools >= 69 - setuptools_scm - wquantiles - xlsxwriter -setup_requires = - setuptools >= 69 - setuptools_scm - -[options.extras_require] -tests = - coverage - coveralls - pytest - pytest-cov - pytest-mpl -optional_plotting = - plotly -optional_io_formats = - datapackage - pandas-datareader - xlrd - unfccc_di_api >= 3.0.1 -tutorials = - pypandoc - nbformat - nbconvert >= 7.3 - jupyter_client - ipykernel -docs = - sphinx - nbsphinx - sphinx-gallery - pillow - numpydoc - kaleido - autodocsumm - # docs requires 'tutorials' -dev = - ruff >= 0.2.1 diff --git a/setup.py b/setup.py deleted file mode 100755 index 20dee1187..000000000 --- a/setup.py +++ /dev/null @@ -1,13 +0,0 @@ -from setuptools import setup - -# Thanks to http://patorjk.com/software/taag/ -logo = r""" - ______ __ __ ______ __ __ -/\ == \ /\ \_\ \ /\ __ \ /\ "-./ \ -\ \ _-/ \ \____ \ \ \ __ \ \ \ \-./\ \ - \ \_\ \/\_____\ \ \_\ \_\ \ \_\ \ \_\ - \/_/ \/_____/ \/_/\/_/ \/_/ \/_/ -""" -print(logo) - -setup(use_scm_version=True) From 4f1823270403dfdcf56e02923b9250d86a783bf3 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 14:24:00 +0100 Subject: [PATCH 10/43] Fix typos --- pyproject.toml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 3d44f66de..f8902d290 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -53,7 +53,7 @@ classifiers = [ [tool.poetry.dependencies] # httpx[http2] included via ixmp4 # requests included via ixmp4 -python = "^3.10" +python = ">=3.10, <3.13" iam-units = ">=2020.4.21" ixmp4 = ">=0.7.1" numpy = ">=1.23.0" @@ -81,10 +81,10 @@ optional = true [tool.poetry.group.docs.dependencies] # docs requires 'tutorials' -autodocsum = "^0.2.12" -kaleido = "^0.2.1" +autodocsumm = "^0.2.12" +kaleido = ">=0.2.0, <0.2.1.post" nbsphinx = "^0.9.3" -numpydocs = "^1.6.0" +numpydoc = "^1.6.0" pillow = "^10.2.0" sphinx = "^7.2.6" sphinx-gallery = "^0.15.0" From 98b0faa1cbfba2f4c588fcf0dc664954ae21f890 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Fri, 1 Mar 2024 14:24:10 +0100 Subject: [PATCH 11/43] Add poetry.lock --- poetry.lock | 4453 +++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 4453 insertions(+) create mode 100644 poetry.lock diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 000000000..5b6b00abd --- /dev/null +++ b/poetry.lock @@ -0,0 +1,4453 @@ +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. + +[[package]] +name = "alabaster" +version = "0.7.16" +description = "A light, configurable Sphinx theme" +optional = false +python-versions = ">=3.9" +files = [ + {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, + {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, +] + +[[package]] +name = "alembic" +version = "1.13.1" +description = "A database migration tool for SQLAlchemy." +optional = false +python-versions = ">=3.8" +files = [ + {file = "alembic-1.13.1-py3-none-any.whl", hash = "sha256:2edcc97bed0bd3272611ce3a98d98279e9c209e7186e43e75bbb1b2bdfdbcc43"}, + {file = "alembic-1.13.1.tar.gz", hash = "sha256:4932c8558bf68f2ee92b9bbcb8218671c627064d5b08939437af6d77dc05e595"}, +] + +[package.dependencies] +Mako = "*" 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snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + #---------------------------------------------- + # load cached venv if cache exists + #---------------------------------------------- + - name: Load cached venv + id: cached-poetry-dependencies + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- + - name: Install library + run: poetry install --no-interaction --with docs,optional_plotting,tutorials - name: Build the docs run: make --directory=docs html diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index df801ce4a..58d2425e1 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -37,10 +37,29 @@ jobs: - name: Install Pandoc uses: r-lib/actions/setup-pandoc@v1 - - name: Install dependencies and package - run: | - python -m pip install --upgrade pip - pip install -e .[tests,optional_plotting,optional_io_formats,tutorials,docs] + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + #---------------------------------------------- + # load cached venv if cache exists + #---------------------------------------------- + - name: Load cached venv + id: cached-poetry-dependencies + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ matrix.os }}-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- + - name: Install library + run: poetry install --no-interaction --with docs,optional_io_formats,optional_plotting,tests,tutorials - name: Test with pytest (including Matplotlib) run: | diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index bae99cfa9..7ce64f346 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -35,8 +35,29 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Install dependencies and package - run: pip install .[tests,optional_plotting,optional_io_formats,tutorials] + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + #---------------------------------------------- + # load cached venv if cache exists + #---------------------------------------------- + - name: Load cached venv + id: cached-poetry-dependencies + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- + - name: Install library + run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials # run tests without Matplotlib & CodeCode tests on earlier Python versions - name: Test with pytest From a81f42dba59d6827d65bdc9345480f579bfa609f Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Mon, 4 Mar 2024 14:58:38 +0100 Subject: [PATCH 14/43] Add correct package folder path --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index 2011639df..24e6cbf5f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,6 +26,7 @@ authors = [ ] license = "Apache-2.0" readme = "README.md" +packages = [{ include = "pyam" }] repository = "https://github.com/IAMconsortium/pyam" documentation = "https://pyam-iamc.readthedocs.io" classifiers = [ From fc4ca0c317fb47455926e7572f9e3762c382ee7a Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Mon, 4 Mar 2024 15:03:46 +0100 Subject: [PATCH 15/43] Update dependencies in nightly workflow --- .github/workflows/nightly.yml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index 58d2425e1..ccdbcc185 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -56,6 +56,11 @@ jobs: path: .venv key: venv-${{ matrix.os }}-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }} #---------------------------------------------- + # Update dependencies to latest versions + #---------------------------------------------- + - name: Update dependencies + run: poetry update --with docs,optional_io_formats,optional_plotting,tests,tutorials + #---------------------------------------------- # install your root project, if required #---------------------------------------------- - name: Install library From a53bb6e0c7faf613f042bf43d48b29cbef8bf857 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 08:16:00 +0100 Subject: [PATCH 16/43] Use >= for all deps instead of ^ --- poetry.lock | 2 +- pyproject.toml | 50 +++++++++++++++++++++++++------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/poetry.lock b/poetry.lock index 5b6b00abd..bf97d24e7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -4450,4 +4450,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.13" -content-hash = "7a23f3a1a00db08727eb8fa527b2e08405ca17a8e2e652feeeb6b8c6fbb17d7c" +content-hash = "ad666289a11e814b3f82f2eadf448f197761634e6859b4a53060f3d0420384cd" diff --git a/pyproject.toml b/pyproject.toml index 24e6cbf5f..4c3604a34 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,18 +48,18 @@ python = ">=3.10, <3.13" iam-units = ">=2020.4.21" ixmp4 = ">=0.7.1" numpy = ">=1.23.0" -openpyxl = "^3.1.2" +openpyxl = ">=3.1.2" pandas = ">=2.0.0" Pint = ">=0.13" -PyYAML = "^6.0.1" +PyYAML = ">=6.0.1" matplotlib = ">=3.6.0" scipy = ">=1.10.0" seaborn = ">=0.11" -six = "^1.16.0" +six = ">=1.16.0" setuptools = ">=69" -setuptools-scm = "^8.0.4" -wquantiles = "^0.6" -XlsxWriter = "^3.2.0" +setuptools-scm = ">=8.0.4" +wquantiles = ">=0.6" +XlsxWriter = ">=3.2.0" [tool.poetry.group.dev] optional = true @@ -72,48 +72,48 @@ optional = true [tool.poetry.group.docs.dependencies] # docs requires 'tutorials' -autodocsumm = "^0.2.12" +autodocsumm = ">=0.2.12" kaleido = ">=0.2.0, <0.2.1.post" -nbsphinx = "^0.9.3" -numpydoc = "^1.6.0" -pillow = "^10.2.0" -sphinx = "^7.2.6" -sphinx-gallery = "^0.15.0" +nbsphinx = ">=0.9.3" +numpydoc = ">=1.6.0" +pillow = ">=10.2.0" +sphinx = ">=7.2.6" +sphinx-gallery = ">=0.15.0" [tool.poetry.group.optional_io_formats] optional = true [tool.poetry.group.optional_io_formats.dependencies] -datapackage = "^1.15.2" -pandas-datareader = "^0.10.0" +datapackage = ">=1.15.2" +pandas-datareader = ">=0.10.0" unfccc_di_api = ">=3.0.1" -xlrd = "^2.0.1" +xlrd = ">=2.0.1" [tool.poetry.group.optional_plotting] optional = true [tool.poetry.group.optional_plotting.dependencies] -plotly = "^5.19.0" +plotly = ">=5.19.0" [tool.poetry.group.tests] optional = true [tool.poetry.group.tests.dependencies] -coverage = "^6.5.0" -coveralls = "^3.3.1" -pytest = "^8.0.2" -pytest-cov = "^4.1.0" -pytest-mpl = "^0.17.0" +coverage = ">=6.5.0" +coveralls = ">=3.3.1" +pytest = ">=8.0.2" +pytest-cov = ">=4.1.0" +pytest-mpl = ">=0.17.0" [tool.poetry.group.tutorials] optional = true [tool.poetry.group.tutorials.dependencies] -ipykernel = "^6.29.3" -jupyter_client = "^8.6.0" +ipykernel = ">=6.29.3" +jupyter_client = ">=8.6.0" nbconvert = ">= 7.3" -nbformat = "^5.9.2" -pypandoc = "^1.13" +nbformat = ">=5.9.2" +pypandoc = ">=1.13" [build-system] From fcc69950bf58572fb728d37e3ff30ecf31575bea Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 08:17:24 +0100 Subject: [PATCH 17/43] Use poetry-venv via poetry run --- .github/workflows/build-docs.yml | 2 +- .github/workflows/nightly.yml | 8 ++------ .github/workflows/pytest.yml | 4 ++-- 3 files changed, 5 insertions(+), 9 deletions(-) diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index 2dd348604..9b9bbfbc5 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -48,4 +48,4 @@ jobs: run: poetry install --no-interaction --with docs,optional_plotting,tutorials - name: Build the docs - run: make --directory=docs html + run: poetry run make --directory=docs html diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index ccdbcc185..f7ef81b87 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -67,11 +67,7 @@ jobs: run: poetry install --no-interaction --with docs,optional_io_formats,optional_plotting,tests,tutorials - name: Test with pytest (including Matplotlib) - run: | - pytest tests --mpl + run: poetry run pytest tests --mpl - name: Build the docs - run: | - cd docs - make html - cd .. + run: poetry run make --directory=docs html diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 7ce64f346..849a8db52 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -62,12 +62,12 @@ jobs: # run tests without Matplotlib & CodeCode tests on earlier Python versions - name: Test with pytest if: ${{ matrix.python-version != '3.12' }} - run: pytest tests + run: poetry run pytest tests # run tests with Matplotlib & CodeCov on latest Python version - name: Test with pytest including Matplotlib & Codecov if: ${{ matrix.python-version == '3.12' }} - run: pytest tests --mpl --cov=./ --cov-report=xml + run: poetry run pytest tests --mpl --cov=./ --cov-report=xml - name: Upload coverage report to Codecov if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' }} From 8f9e47bf228ba910c55b9656fa52850060f73f28 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 08:17:51 +0100 Subject: [PATCH 18/43] Use poetry to build package --- .github/workflows/publish.yml | 23 +++++++++++------------ 1 file changed, 11 insertions(+), 12 deletions(-) diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 5a286f024..4f04683dd 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -19,20 +19,19 @@ jobs: - uses: actions/setup-python@v5 - - name: Cache Python packages - uses: actions/cache@v4 + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 with: - path: | - ~/.cache/pip - key: publish-${{ runner.os }} - - - name: Upgrade pip, wheel, setuptools-scm - run: python -m pip install --upgrade pip wheel setuptools-scm twine - + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + - name: Install poetry dynamic versioning plugin + run: poetry self add "poetry-dynamic-versioning[plugin]" - name: Build package - run: | - python3 setup.py bdist_wheel sdist - twine check dist/* + run: poetry build - name: Publish to TestPyPI uses: pypa/gh-action-pypi-publish@v1.4.1 From 0f6e7fa6840490ba016a5e87f86ce70313a066d3 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 08:18:30 +0100 Subject: [PATCH 19/43] Use poetry to correctly install --- .github/workflows/pytest-legacy.yml | 31 ++++++++++++++++++++++++----- 1 file changed, 26 insertions(+), 5 deletions(-) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 06887b7fe..14ad0e418 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -22,13 +22,34 @@ jobs: with: python-version: '3.10' + #---------------------------------------------- + # ----- install & configure poetry ----- + #---------------------------------------------- + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + virtualenvs-create: true + virtualenvs-in-project: true + installer-parallel: true + #---------------------------------------------- + # load cached venv if cache exists + #---------------------------------------------- + - name: Load cached venv + id: cached-poetry-dependencies + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + #---------------------------------------------- + # install your root project, if required + #---------------------------------------------- + - name: Install library + run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials + - name: Install specific out-dated version of dependencies # Update the package requirements when changing minimum dependency versions # Please also add a section "Dependency changes" to the release notes - run: pip install pandas==2.0.0 numpy==1.23.0 matplotlib==3.6.0 iam-units==2020.4.21 xlrd==2.0.1 pint==0.13 - - - name: Install other dependencies and package - run: pip install .[tests,optional_plotting,optional_io_formats,tutorials] + run: poetry run pip install pandas==2.0.0 numpy==1.23.0 matplotlib==3.6.0 iam-units==2020.4.21 xlrd==2.0.1 pint==0.13 - name: Test with pytest - run: pytest tests + run: poetry run pytest tests From 091aa357c6b3bbf65fefb7fa3921aa21c1a3626a Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 08:47:10 +0100 Subject: [PATCH 20/43] Bump minimum pandas version to fit ixmp4 --- .github/workflows/pytest-legacy.yml | 16 +++- RELEASE_NOTES.md | 6 ++ poetry.lock | 134 ++++++++++++++-------------- pyproject.toml | 4 +- 4 files changed, 87 insertions(+), 73 deletions(-) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 14ad0e418..2c1ca132e 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -40,16 +40,24 @@ jobs: with: path: .venv key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + + - name: Enforce usage of specific out-dated version of dependencies + # Update the package requirements when changing minimum dependency versions + # Please also add a section "Dependency changes" to the release notes + run: | + poetry add iam-units@2020.4.21 + poetry add matplotlib@3.6.0 + poetry add numpy@1.23.0 + poetry add pandas@2.1.2 + poetry add pint@0.13 + poetry add xlrd@2.0.1 --group optional_io_formats + #---------------------------------------------- # install your root project, if required #---------------------------------------------- - name: Install library run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials - - name: Install specific out-dated version of dependencies - # Update the package requirements when changing minimum dependency versions - # Please also add a section "Dependency changes" to the release notes - run: poetry run pip install pandas==2.0.0 numpy==1.23.0 matplotlib==3.6.0 iam-units==2020.4.21 xlrd==2.0.1 pint==0.13 - name: Test with pytest run: poetry run pytest tests diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md index 2a6940979..af285bc22 100644 --- a/RELEASE_NOTES.md +++ b/RELEASE_NOTES.md @@ -1,5 +1,11 @@ # Next release +## Dependency changes + +Bumped minimum version of pandas to 2.1.2 to fit **ixmp4**'s requirement. + +## Individual updates + - [#830](https://github.com/IAMconsortium/pyam/pull/830) Implement more consistent logging behavior with **ixmp4** - [#829](https://github.com/IAMconsortium/pyam/pull/829) Add a `pyam.iiasa.platforms()` function for a list of available platforms - [#826](https://github.com/IAMconsortium/pyam/pull/826) Add `read_ixmp4()` function and extend integration test diff --git a/poetry.lock b/poetry.lock index bf97d24e7..547d9f06b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -180,17 +180,17 @@ css = ["tinycss2 (>=1.1.0,<1.3)"] [[package]] name = "boto3" -version = "1.34.53" +version = "1.34.55" description = "The AWS SDK for Python" optional = false python-versions = ">= 3.8" files = [ - {file = "boto3-1.34.53-py3-none-any.whl", hash = "sha256:340c73f57fcca6f503403e2e13a0a4ad44bec218feee2e0896be612324394afd"}, - {file = "boto3-1.34.53.tar.gz", hash = "sha256:cd30261a782824ce543a628ae524480abb4ca6ab4e4a2631477e48baed43b5f2"}, + {file = "boto3-1.34.55-py3-none-any.whl", hash = "sha256:ee2c96e8a4a741ecb3380e0a406baa67bfea6186be99b75bdeca3e1b5044c088"}, + {file = "boto3-1.34.55.tar.gz", hash = "sha256:9a6d59e035fac4366dbdaf909c4f66fc817dfbec044fa71564dcf036ad46bb19"}, ] [package.dependencies] -botocore = ">=1.34.53,<1.35.0" +botocore = ">=1.34.55,<1.35.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -199,13 +199,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.34.53" +version = "1.34.55" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">= 3.8" files = [ - {file = "botocore-1.34.53-py3-none-any.whl", hash = "sha256:cbbcaddc35738d32df55d26ed5561cf3fa32751a6b22e7e342be87b5e3f55eec"}, - {file = "botocore-1.34.53.tar.gz", hash = "sha256:3d243781e994dfc5b20036d9fb92672bfaef4dbe388eaa79dae6440ea56c53eb"}, + {file = "botocore-1.34.55-py3-none-any.whl", hash = "sha256:07044c3cbfb86d0ecb9c56d887b8ad63a72eff0e4f6ab329cf335f1fd867ea0b"}, + {file = "botocore-1.34.55.tar.gz", hash = "sha256:bb333e3845bfe65600f36bf92d09668306e224fa9f4e4f87b77f6957192ae59f"}, ] [package.dependencies] @@ -1307,13 +1307,13 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio [[package]] name = "ipython" -version = "8.22.1" +version = "8.22.2" description = "IPython: Productive Interactive Computing" optional = false python-versions = ">=3.10" files = [ - {file = "ipython-8.22.1-py3-none-any.whl", hash = "sha256:869335e8cded62ffb6fac8928e5287a05433d6462e3ebaac25f4216474dd6bc4"}, - {file = "ipython-8.22.1.tar.gz", hash = "sha256:39c6f9efc079fb19bfb0f17eee903978fe9a290b1b82d68196c641cecb76ea22"}, + {file = "ipython-8.22.2-py3-none-any.whl", hash = "sha256:3c86f284c8f3d8f2b6c662f885c4889a91df7cd52056fd02b7d8d6195d7f56e9"}, + {file = "ipython-8.22.2.tar.gz", hash = "sha256:2dcaad9049f9056f1fef63514f176c7d41f930daa78d05b82a176202818f2c14"}, ] [package.dependencies] @@ -2083,13 +2083,13 @@ test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>= [[package]] name = "nbconvert" -version = "7.16.1" +version = "7.16.2" description = "Converting Jupyter Notebooks (.ipynb files) to other formats. Output formats include asciidoc, html, latex, markdown, pdf, py, rst, script. nbconvert can be used both as a Python library (`import nbconvert`) or as a command line tool (invoked as `jupyter nbconvert ...`)." optional = false python-versions = ">=3.8" files = [ - {file = "nbconvert-7.16.1-py3-none-any.whl", hash = "sha256:3188727dffadfdc9c6a1c7250729063d7bc78b355ad7aa023138afa030d1cd07"}, - {file = "nbconvert-7.16.1.tar.gz", hash = "sha256:e79e6a074f49ba3ed29428ed86487bf51509d9aab613bd8522ac08f6d28fd7fd"}, + {file = "nbconvert-7.16.2-py3-none-any.whl", hash = "sha256:0c01c23981a8de0220255706822c40b751438e32467d6a686e26be08ba784382"}, + {file = "nbconvert-7.16.2.tar.gz", hash = "sha256:8310edd41e1c43947e4ecf16614c61469ebc024898eb808cce0999860fc9fb16"}, ] [package.dependencies] @@ -3089,13 +3089,13 @@ test = ["pytest-cov"] [[package]] name = "python-dateutil" -version = "2.9.0" +version = "2.9.0.post0" description = "Extensions to the standard Python datetime module" optional = false 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"sha256:dd53b6c4e6d960600fd6532b79ee28e2da489322fcf6648738134587faf767b6"}, ] [package.dependencies] @@ -4450,4 +4450,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.13" -content-hash = "ad666289a11e814b3f82f2eadf448f197761634e6859b4a53060f3d0420384cd" +content-hash = "5f850125f421d497b576310492ddd22584e2ccc3ecfd225f41ac59877e68614c" diff --git a/pyproject.toml b/pyproject.toml index 4c3604a34..40e988bd4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -47,12 +47,12 @@ classifiers = [ python = ">=3.10, <3.13" iam-units = ">=2020.4.21" ixmp4 = ">=0.7.1" +matplotlib = ">=3.6.0" numpy = ">=1.23.0" openpyxl = ">=3.1.2" -pandas = ">=2.0.0" +pandas = ">=2.1.2" Pint = ">=0.13" PyYAML = ">=6.0.1" -matplotlib = ">=3.6.0" scipy = ">=1.10.0" seaborn = ">=0.11" six = ">=1.16.0" From 7f4944058e0eec8669fe5677b38c0980df6edfda Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 08:56:39 +0100 Subject: [PATCH 21/43] Set bash as default shell --- .github/workflows/pytest.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 849a8db52..a85c092d2 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -23,6 +23,10 @@ jobs: - '3.12' fail-fast: false + + defaults: + run: + shell: bash runs-on: ${{ matrix.os }} name: ${{ matrix.os }} py${{ matrix.python-version }} From e871c5d2e201f3801f4d1c3114379a3d37f10bae Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 09:04:50 +0100 Subject: [PATCH 22/43] Bump minimum numpy version to fit pandas and ixmp4 --- .github/workflows/pytest-legacy.yml | 2 +- RELEASE_NOTES.md | 2 +- poetry.lock | 2 +- pyproject.toml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 2c1ca132e..7a367a17a 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -47,7 +47,7 @@ jobs: run: | poetry add iam-units@2020.4.21 poetry add matplotlib@3.6.0 - poetry add numpy@1.23.0 + poetry add numpy@1.23.2 poetry add pandas@2.1.2 poetry add pint@0.13 poetry add xlrd@2.0.1 --group optional_io_formats diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md index af285bc22..660e9d5e8 100644 --- a/RELEASE_NOTES.md +++ b/RELEASE_NOTES.md @@ -2,7 +2,7 @@ ## Dependency changes -Bumped minimum version of pandas to 2.1.2 to fit **ixmp4**'s requirement. +Bumped minimum version of pandas and numpy to fit **ixmp4**'s requirement. ## Individual updates diff --git a/poetry.lock b/poetry.lock index 547d9f06b..030bd1334 100644 --- a/poetry.lock +++ b/poetry.lock @@ -4450,4 +4450,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.13" -content-hash = "5f850125f421d497b576310492ddd22584e2ccc3ecfd225f41ac59877e68614c" +content-hash = "e186befb326b41beda98890f420992c2130e7df3e42f0d44ae3a3bc8731b9aea" diff --git a/pyproject.toml b/pyproject.toml index 40e988bd4..d2c367dae 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,7 +48,7 @@ python = ">=3.10, <3.13" iam-units = ">=2020.4.21" ixmp4 = ">=0.7.1" matplotlib = ">=3.6.0" -numpy = ">=1.23.0" +numpy = ">=1.23.2" openpyxl = ">=3.1.2" pandas = ">=2.1.2" Pint = ">=0.13" From 05f7a2b376b9621a96244947db55a383615598a4 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Tue, 5 Mar 2024 09:08:38 +0100 Subject: [PATCH 23/43] Bump minimum numpy version to fit pandas and ixmp4 --- .github/workflows/pytest-legacy.yml | 2 +- poetry.lock | 2 +- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 7a367a17a..d542fb8a2 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -47,7 +47,7 @@ jobs: run: | poetry add iam-units@2020.4.21 poetry add matplotlib@3.6.0 - poetry add numpy@1.23.2 + poetry add numpy@1.26.0 poetry add pandas@2.1.2 poetry add pint@0.13 poetry add xlrd@2.0.1 --group optional_io_formats diff --git a/poetry.lock b/poetry.lock index 030bd1334..3c654fcc9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -4450,4 +4450,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.13" -content-hash = "e186befb326b41beda98890f420992c2130e7df3e42f0d44ae3a3bc8731b9aea" +content-hash = "4702fd674596f37596ef2d7d9d259a99003a17c7d863b0c99ae563a60702dd64" diff --git a/pyproject.toml b/pyproject.toml index d2c367dae..e56275293 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,7 +48,7 @@ python = ">=3.10, <3.13" iam-units = ">=2020.4.21" ixmp4 = ">=0.7.1" matplotlib = ">=3.6.0" -numpy = ">=1.23.2" +numpy = ">=1.26.0" openpyxl = ">=3.1.2" pandas = ">=2.1.2" Pint = ">=0.13" From 9608cdecee4f27bbcea0ed68e72305d0f19da0d5 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 07:37:42 +0100 Subject: [PATCH 24/43] Remove outdated comments --- pyproject.toml | 2 -- 1 file changed, 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index e56275293..a5dc5f762 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -42,8 +42,6 @@ classifiers = [ # in our minimum-reqs test in the file ./.github/workflows/pytest-dependency.yml # Please also add a section "Dependency changes" to the release notes [tool.poetry.dependencies] -# httpx[http2] included via ixmp4 -# requests included via ixmp4 python = ">=3.10, <3.13" iam-units = ">=2020.4.21" ixmp4 = ">=0.7.1" From cede41783b652f529e0bbb682a46d3258512d0be Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 07:55:28 +0100 Subject: [PATCH 25/43] Fix step name for inferred cache name --- .github/workflows/pytest-legacy.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index d542fb8a2..567f9b36d 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -18,6 +18,7 @@ jobs: - uses: actions/checkout@v4 - name: Set up Python + id: setup-python uses: actions/setup-python@v5 with: python-version: '3.10' From 0c4a580423429b597c88b8ac838285db5781800c Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 07:59:13 +0100 Subject: [PATCH 26/43] Remove duplicate dependency install --- .github/workflows/nightly.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index f7ef81b87..11bbd53ff 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -64,7 +64,7 @@ jobs: # install your root project, if required #---------------------------------------------- - name: Install library - run: poetry install --no-interaction --with docs,optional_io_formats,optional_plotting,tests,tutorials + run: poetry install --no-interaction --only-root - name: Test with pytest (including Matplotlib) run: poetry run pytest tests --mpl From a92cc51eba00066b3fafb0a035728b67881721c4 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 08:03:12 +0100 Subject: [PATCH 27/43] Use poetry-dynamic-versioning build backend --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index a5dc5f762..645044ae7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -115,8 +115,8 @@ pypandoc = ">=1.13" [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +build-backend = "poetry_dynamic_versioning.backend" +requires = ["poetry-core>=1.2.0", "poetry-dynamic-versioning"] [tool.ruff] # Exclude a variety of commonly ignored directories. From b0724d66254dd5bf9691aaf6e755990621f513c8 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 08:05:02 +0100 Subject: [PATCH 28/43] Mark PR in release notes --- RELEASE_NOTES.md | 1 + 1 file changed, 1 insertion(+) diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md index 660e9d5e8..c3233a147 100644 --- a/RELEASE_NOTES.md +++ b/RELEASE_NOTES.md @@ -6,6 +6,7 @@ Bumped minimum version of pandas and numpy to fit **ixmp4**'s requirement. ## Individual updates +- [#827](https://github.com/IAMconsortium/pyam/pull/827) Migrate to poetry for project management - [#830](https://github.com/IAMconsortium/pyam/pull/830) Implement more consistent logging behavior with **ixmp4** - [#829](https://github.com/IAMconsortium/pyam/pull/829) Add a `pyam.iiasa.platforms()` function for a list of available platforms - [#826](https://github.com/IAMconsortium/pyam/pull/826) Add `read_ixmp4()` function and extend integration test From 0f092c8f6a0f5a0d5aa5ed7e49a20a70f730267a Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 08:06:38 +0100 Subject: [PATCH 29/43] Fix step name for inferred cache names --- .github/workflows/build-docs.yml | 1 + .github/workflows/pytest.yml | 1 + 2 files changed, 2 insertions(+) diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index 9b9bbfbc5..afb2bdec5 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -16,6 +16,7 @@ jobs: - uses: actions/checkout@v4 - name: Set up Python + id: setup-python uses: actions/setup-python@v5 with: python-version: '3.10' diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index a85c092d2..eccbd6054 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -35,6 +35,7 @@ jobs: - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} + id: setup-python uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} From d24a34f8f2ee9382e6a89f82d68d4408e5a1af0e Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 08:31:16 +0100 Subject: [PATCH 30/43] Include poetry setup guide --- CONTRIBUTING.rst | 88 ++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 88 insertions(+) diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index 3e92033e1..85f0e405f 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -33,6 +33,94 @@ believe that when posting ideas or submitting code to an open-source project, it should be obvious and self-evident that any such contributions are made in the spirit of open collaborative development. +Setup +----- + +.. code-block:: bash + + # Install Poetry, minimum version >=1.2 required + curl -sSL https://install.python-poetry.org | python - + + # You may have to reinitialize your shell at this point. + source ~/.bashrc + + # Activate in-project virtualenvs + poetry config virtualenvs.in-project true + + # Add dynamic versioning plugin + poetry self add "poetry-dynamic-versioning[plugin]" + + # Install dependencies + # (using "--with docs" if docs dependencies should be installed as well) + poetry install --with docs,server,dev + + # Activate virtual environment + poetry shell + + # Copy the template environment configuration + cp template.env .env + +Update poetry +^^^^^^^^^^^^^ + +Developing ixmp4 requires poetry ``>= 1.2``. + +If you already have a previous version of poetry installed you will need to update. The +first step is removing the old poetry version: + +.. code-block:: bash + + curl -sSL https://install.python-poetry.org | python3 - --uninstall + + +after that, the latest poetry version can be installed using: + +.. code-block:: bash + curl -sSL https://install.python-poetry.org | python3 - + + +details can be found here in the poetry docs: +https://python-poetry.org/docs/#installation. + +Resolve conflicts in poetry.lock +-------------------------------- + +When updating dependencies it can happen that a conflict between the current and the +target poetry.lock file occurs. In this case the following steps should be taken to +resolve the conflict. + +#. Do not attempt to manually resolve in the GitHub web interface. +#. Instead checkout the target branch locally and merge into your branch: + +.. code-block:: bash + git checkout main + git pull origin main + git checkout my-branch + git merge main + + +#. After the last step you'll have a merge conflict in poetry.lock. +#. Instead of resolving the conflict, directly checkout the one from main and rewrite + it: + +.. code-block:: bash + # Get poetry.lock to look like it does in master + git checkout main poetry.lock + # Rewrite the lock file + poetry lock --no-update + +#. After that simply add poetry.lock to mark the conflict as resolved and commit to + finalize the merge: + +.. code-block:: bash + git add poetry.lock + git commit + + # and most likely needed + poetry install + +(Taken from https://www.peterbe.com/plog/how-to-resolve-a-git-conflict-in-poetry.lock) + .. _`pep8`: https://www.python.org/dev/peps/pep-0008/ .. _`numpydoc docstring guide`: https://numpydoc.readthedocs.io/en/latest/format.html From 3c19f3b79fe665c80a0d9740c5153bacd93a85b3 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 08:43:00 +0100 Subject: [PATCH 31/43] Use blank lines to start code-blocks --- CONTRIBUTING.rst | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index 85f0e405f..74fedcfcb 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -76,6 +76,7 @@ first step is removing the old poetry version: after that, the latest poetry version can be installed using: .. code-block:: bash + curl -sSL https://install.python-poetry.org | python3 - @@ -93,6 +94,7 @@ resolve the conflict. #. Instead checkout the target branch locally and merge into your branch: .. code-block:: bash + git checkout main git pull origin main git checkout my-branch @@ -104,6 +106,7 @@ resolve the conflict. it: .. code-block:: bash + # Get poetry.lock to look like it does in master git checkout main poetry.lock # Rewrite the lock file @@ -113,9 +116,10 @@ resolve the conflict. finalize the merge: .. code-block:: bash + git add poetry.lock git commit - + # and most likely needed poetry install From c025388a043279af27225c4585fc3026ea270c2d Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 08:45:14 +0100 Subject: [PATCH 32/43] Bump setup-pandoc version --- .github/workflows/build-docs.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index afb2bdec5..8ff597605 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -22,7 +22,7 @@ jobs: python-version: '3.10' - name: Install Pandoc - uses: r-lib/actions/setup-pandoc@v1 + uses: r-lib/actions/setup-pandoc@v2 #---------------------------------------------- # ----- install & configure poetry ----- From 24fa760de154c614aa4e3bd9a5bf20acbf069d7f Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 11:54:50 +0100 Subject: [PATCH 33/43] Use cache more logically --- .github/workflows/pytest-legacy.yml | 35 ++++++++++++++++------------- 1 file changed, 20 insertions(+), 15 deletions(-) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 567f9b36d..bb1ad673a 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -32,6 +32,19 @@ jobs: virtualenvs-create: true virtualenvs-in-project: true installer-parallel: true + + - name: Enforce usage of specific out-dated versions of dependencies + # Update the package requirements when changing minimum dependency versions + # Please also add a section "Dependency changes" to the release notes + # Don't install packages, just update lock file to see if a cache exists + run: | + poetry add iam-units@2020.4.21 --lock + poetry add matplotlib@3.6.0 --lock + poetry add numpy@1.26.0 --lock + poetry add pandas@2.1.2 --lock + poetry add pint@0.13 --lock + poetry add xlrd@2.0.1 --group optional_io_formats --lock + #---------------------------------------------- # load cached venv if cache exists #---------------------------------------------- @@ -42,23 +55,15 @@ jobs: path: .venv key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - - name: Enforce usage of specific out-dated version of dependencies - # Update the package requirements when changing minimum dependency versions - # Please also add a section "Dependency changes" to the release notes - run: | - poetry add iam-units@2020.4.21 - poetry add matplotlib@3.6.0 - poetry add numpy@1.26.0 - poetry add pandas@2.1.2 - poetry add pint@0.13 - poetry add xlrd@2.0.1 --group optional_io_formats + #----------------------------------------------- + # install dependencies, if cache does not exist + #----------------------------------------------- + - name: Install dependencies + if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials --no-root - #---------------------------------------------- - # install your root project, if required - #---------------------------------------------- - name: Install library - run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials - + run: poetry install --no-interaction - name: Test with pytest run: poetry run pytest tests From dbe1cc65f5915d52aef1c16133eae285c983fae2 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 12:20:26 +0100 Subject: [PATCH 34/43] Spread updated cache usage --- .github/workflows/nightly.yml | 22 ++++++++++++++++------ .github/workflows/pytest-legacy.yml | 2 +- 2 files changed, 17 insertions(+), 7 deletions(-) diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index 11bbd53ff..9bb4c0752 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -35,7 +35,7 @@ jobs: python-version: ${{ matrix.python-version }} - name: Install Pandoc - uses: r-lib/actions/setup-pandoc@v1 + uses: r-lib/actions/setup-pandoc@v2 #---------------------------------------------- # ----- install & configure poetry ----- @@ -46,6 +46,13 @@ jobs: virtualenvs-create: true virtualenvs-in-project: true installer-parallel: true + + #---------------------------------------------- + # Update dependencies to latest versions + #---------------------------------------------- + - name: Update dependencies + run: poetry update --with docs,optional_io_formats,optional_plotting,tests,tutorials --lock + #---------------------------------------------- # load cached venv if cache exists #---------------------------------------------- @@ -55,11 +62,14 @@ jobs: with: path: .venv key: venv-${{ matrix.os }}-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }} - #---------------------------------------------- - # Update dependencies to latest versions - #---------------------------------------------- - - name: Update dependencies - run: poetry update --with docs,optional_io_formats,optional_plotting,tests,tutorials + + #----------------------------------------------- + # install dependencies if cache does not exist + #----------------------------------------------- + - name: Install dependencies + if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + run: poetry install --no-interaction --with docs,optional_io_formats,optional_plotting,tests,tutorials --no-root + #---------------------------------------------- # install your root project, if required #---------------------------------------------- diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index bb1ad673a..662e0d0e7 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -56,7 +56,7 @@ jobs: key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} #----------------------------------------------- - # install dependencies, if cache does not exist + # install dependencies if cache does not exist #----------------------------------------------- - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' From 83ed0f0f44bfbcf56b4c87e12b35bdadcd42d05b Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 14:34:43 +0100 Subject: [PATCH 35/43] Remove unused setuptools dependency --- poetry.lock | 66 +++++++++++--------------------------------------- pyproject.toml | 2 -- 2 files changed, 14 insertions(+), 54 deletions(-) diff --git a/poetry.lock b/poetry.lock index 3c654fcc9..0db4aeaed 100644 --- a/poetry.lock +++ b/poetry.lock @@ -180,17 +180,17 @@ css = ["tinycss2 (>=1.1.0,<1.3)"] [[package]] name = "boto3" -version = "1.34.55" +version = "1.34.56" description = "The AWS SDK for Python" optional = false python-versions = ">= 3.8" files = [ - {file = "boto3-1.34.55-py3-none-any.whl", hash = "sha256:ee2c96e8a4a741ecb3380e0a406baa67bfea6186be99b75bdeca3e1b5044c088"}, - {file = "boto3-1.34.55.tar.gz", hash = "sha256:9a6d59e035fac4366dbdaf909c4f66fc817dfbec044fa71564dcf036ad46bb19"}, + {file = "boto3-1.34.56-py3-none-any.whl", hash = "sha256:300888f0c1b6f32f27f85a9aa876f50f46514ec619647af7e4d20db74d339714"}, + {file = "boto3-1.34.56.tar.gz", hash = "sha256:b26928f9a21cf3649cea20a59061340f3294c6e7785ceb6e1a953eb8010dc3ba"}, ] [package.dependencies] -botocore = ">=1.34.55,<1.35.0" +botocore = ">=1.34.56,<1.35.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -199,13 +199,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.34.55" +version = "1.34.56" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">= 3.8" files = [ - {file = "botocore-1.34.55-py3-none-any.whl", hash = "sha256:07044c3cbfb86d0ecb9c56d887b8ad63a72eff0e4f6ab329cf335f1fd867ea0b"}, - {file = "botocore-1.34.55.tar.gz", hash = "sha256:bb333e3845bfe65600f36bf92d09668306e224fa9f4e4f87b77f6957192ae59f"}, + {file = "botocore-1.34.56-py3-none-any.whl", hash = "sha256:fff66e22a5589c2d58fba57d1d95c334ce771895e831f80365f6cff6453285ec"}, + {file = "botocore-1.34.56.tar.gz", hash = "sha256:bffeb71ab21d47d4ecf947d9bdb2fbd1b0bbd0c27742cea7cf0b77b701c41d9f"}, ] [package.dependencies] @@ -1357,13 +1357,13 @@ six = "*" [[package]] name = "ixmp4" -version = "0.7.1" +version = "0.7.2" description = "a data warehouse for scenario analysis" optional = false python-versions = ">=3.10,<3.13" files = [ - {file = "ixmp4-0.7.1-py3-none-any.whl", hash = "sha256:16f8145487f13f225fa42d161331f64605f9952beb895853ee8d0a1b6d2276a4"}, - {file = "ixmp4-0.7.1.tar.gz", hash = "sha256:426c16813ea8581037cf7929fd38b909bd706632f8020de3c5a8334e67a40a4c"}, + {file = "ixmp4-0.7.2-py3-none-any.whl", hash = "sha256:878dddd2d4238fae45dff213666b26b68852be612897a963bcd0ac408ee1b1e5"}, + {file = "ixmp4-0.7.2.tar.gz", hash = "sha256:ba9d6d958b86b024121c9ab3cd554065e58ac0483bbee8b49a6e1def09cb7ead"}, ] [package.dependencies] @@ -3013,13 +3013,13 @@ files = [ [[package]] name = "pyparsing" -version = "3.1.1" +version = "3.1.2" description = "pyparsing module - Classes and methods to define and execute parsing grammars" optional = false python-versions = ">=3.6.8" files = [ - {file = "pyparsing-3.1.1-py3-none-any.whl", hash = "sha256:32c7c0b711493c72ff18a981d24f28aaf9c1fb7ed5e9667c9e84e3db623bdbfb"}, - {file = "pyparsing-3.1.1.tar.gz", hash = "sha256:ede28a1a32462f5a9705e07aea48001a08f7cf81a021585011deba701581a0db"}, + {file = "pyparsing-3.1.2-py3-none-any.whl", hash = "sha256:f9db75911801ed778fe61bb643079ff86601aca99fcae6345aa67292038fb742"}, + {file = "pyparsing-3.1.2.tar.gz", hash = "sha256:a1bac0ce561155ecc3ed78ca94d3c9378656ad4c94c1270de543f621420f94ad"}, ] [package.extras] @@ -3595,44 +3595,6 @@ dev = ["flake8", "flit", "mypy", "pandas-stubs", "pre-commit", "pytest", "pytest docs = ["ipykernel", "nbconvert", "numpydoc", "pydata_sphinx_theme (==0.10.0rc2)", "pyyaml", "sphinx (<6.0.0)", "sphinx-copybutton", "sphinx-design", "sphinx-issues"] stats = ["scipy (>=1.7)", "statsmodels (>=0.12)"] -[[package]] -name = "setuptools" -version = "69.1.1" -description = "Easily download, build, install, upgrade, and uninstall Python packages" -optional = false -python-versions = ">=3.8" -files = [ - {file = "setuptools-69.1.1-py3-none-any.whl", hash = "sha256:02fa291a0471b3a18b2b2481ed902af520c69e8ae0919c13da936542754b4c56"}, - {file = "setuptools-69.1.1.tar.gz", hash = "sha256:5c0806c7d9af348e6dd3777b4f4dbb42c7ad85b190104837488eab9a7c945cf8"}, -] - -[package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"] -testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] -testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] - -[[package]] -name = "setuptools-scm" -version = "8.0.4" -description = "the blessed package to manage your versions by scm tags" -optional = false -python-versions = ">=3.8" -files = [ - {file = "setuptools-scm-8.0.4.tar.gz", hash = "sha256:b5f43ff6800669595193fd09891564ee9d1d7dcb196cab4b2506d53a2e1c95c7"}, - {file = "setuptools_scm-8.0.4-py3-none-any.whl", hash = "sha256:b47844cd2a84b83b3187a5782c71128c28b4c94cad8bfb871da2784a5cb54c4f"}, -] - -[package.dependencies] -packaging = ">=20" -setuptools = "*" -tomli = {version = ">=1", markers = "python_version < \"3.11\""} -typing-extensions = "*" - -[package.extras] -docs = ["entangled-cli[rich]", "mkdocs", "mkdocs-entangled-plugin", "mkdocs-material", "mkdocstrings[python]", "pygments"] -rich = ["rich"] -test = ["build", "pytest", "rich", "wheel"] - [[package]] name = "six" version = "1.16.0" @@ -4450,4 +4412,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.13" -content-hash = "4702fd674596f37596ef2d7d9d259a99003a17c7d863b0c99ae563a60702dd64" +content-hash = "0f21290a45d050f5a117be2cb6b2df932d87e859414c7d1aa9253ec4a4317c48" diff --git a/pyproject.toml b/pyproject.toml index 645044ae7..ec7f6b8a2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -54,8 +54,6 @@ PyYAML = ">=6.0.1" scipy = ">=1.10.0" seaborn = ">=0.11" six = ">=1.16.0" -setuptools = ">=69" -setuptools-scm = ">=8.0.4" wquantiles = ">=0.6" XlsxWriter = ">=3.2.0" From 449190698cd19d9ac9d16e287fe67df59450fab9 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 14:36:03 +0100 Subject: [PATCH 36/43] Fix typos --- CONTRIBUTING.rst | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index 74fedcfcb..2c46f9a2a 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -56,14 +56,12 @@ Setup # Activate virtual environment poetry shell - - # Copy the template environment configuration - cp template.env .env + Update poetry ^^^^^^^^^^^^^ -Developing ixmp4 requires poetry ``>= 1.2``. +Developing pyam requires poetry ``>= 1.2``. If you already have a previous version of poetry installed you will need to update. The first step is removing the old poetry version: @@ -119,7 +117,7 @@ resolve the conflict. git add poetry.lock git commit - + # and most likely needed poetry install From e6ad7290dc219d99d68e9f259dddd7429f2b150f Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 14:43:04 +0100 Subject: [PATCH 37/43] Harmonize CI workflow headings --- .github/workflows/build-docs.yml | 20 ++++++++++--------- .github/workflows/nightly.yml | 30 ++++++++++++++--------------- .github/workflows/publish.yml | 6 +++--- .github/workflows/pytest-legacy.yml | 21 +++++++++++--------- .github/workflows/pytest.yml | 19 +++++++++--------- 5 files changed, 51 insertions(+), 45 deletions(-) diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index 8ff597605..79af12c1e 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -24,27 +24,29 @@ jobs: - name: Install Pandoc uses: r-lib/actions/setup-pandoc@v2 - #---------------------------------------------- - # ----- install & configure poetry ----- - #---------------------------------------------- + #------------------------------ + # install & configure poetry + #------------------------------ - name: Install Poetry uses: snok/install-poetry@v1 with: virtualenvs-create: true virtualenvs-in-project: true installer-parallel: true - #---------------------------------------------- - # load cached venv if cache exists - #---------------------------------------------- + + #------------------------------------ + # load cached venv if cache exists + #------------------------------------ - name: Load cached venv id: cached-poetry-dependencies uses: actions/cache@v4 with: path: .venv key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - #---------------------------------------------- - # install your root project, if required - #---------------------------------------------- + + #------------------------ + # install root project + #------------------------ - name: Install library run: poetry install --no-interaction --with docs,optional_plotting,tutorials diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index 9bb4c0752..8c165a152 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -37,9 +37,9 @@ jobs: - name: Install Pandoc uses: r-lib/actions/setup-pandoc@v2 - #---------------------------------------------- - # ----- install & configure poetry ----- - #---------------------------------------------- + #------------------------------ + # install & configure poetry + #------------------------------ - name: Install Poetry uses: snok/install-poetry@v1 with: @@ -47,15 +47,15 @@ jobs: virtualenvs-in-project: true installer-parallel: true - #---------------------------------------------- - # Update dependencies to latest versions - #---------------------------------------------- + #------------------------------------------ + # update dependencies to latest versions + #------------------------------------------ - name: Update dependencies run: poetry update --with docs,optional_io_formats,optional_plotting,tests,tutorials --lock - #---------------------------------------------- - # load cached venv if cache exists - #---------------------------------------------- + #------------------------------------ + # load cached venv if cache exists + #------------------------------------ - name: Load cached venv id: cached-poetry-dependencies uses: actions/cache@v4 @@ -63,16 +63,16 @@ jobs: path: .venv key: venv-${{ matrix.os }}-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }} - #----------------------------------------------- - # install dependencies if cache does not exist - #----------------------------------------------- + #------------------------------------------------ + # install dependencies if cache does not exist + #------------------------------------------------ - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: poetry install --no-interaction --with docs,optional_io_formats,optional_plotting,tests,tutorials --no-root - #---------------------------------------------- - # install your root project, if required - #---------------------------------------------- + #------------------------ + # install root project + #------------------------ - name: Install library run: poetry install --no-interaction --only-root diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 4f04683dd..efce8d801 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -19,9 +19,9 @@ jobs: - uses: actions/setup-python@v5 - #---------------------------------------------- - # ----- install & configure poetry ----- - #---------------------------------------------- + #------------------------------ + # install & configure poetry + #------------------------------ - name: Install Poetry uses: snok/install-poetry@v1 with: diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 662e0d0e7..43e9b5237 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -23,9 +23,9 @@ jobs: with: python-version: '3.10' - #---------------------------------------------- - # ----- install & configure poetry ----- - #---------------------------------------------- + #------------------------------ + # install & configure poetry + #------------------------------ - name: Install Poetry uses: snok/install-poetry@v1 with: @@ -45,9 +45,9 @@ jobs: poetry add pint@0.13 --lock poetry add xlrd@2.0.1 --group optional_io_formats --lock - #---------------------------------------------- - # load cached venv if cache exists - #---------------------------------------------- + #------------------------------------ + # load cached venv if cache exists + #------------------------------------ - name: Load cached venv id: cached-poetry-dependencies uses: actions/cache@v4 @@ -55,13 +55,16 @@ jobs: path: .venv key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - #----------------------------------------------- - # install dependencies if cache does not exist - #----------------------------------------------- + #------------------------------------------------ + # install dependencies if cache does not exist + #------------------------------------------------ - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials --no-root + #------------------------ + # install root project + #------------------------ - name: Install library run: poetry install --no-interaction diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index eccbd6054..3b985e089 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -40,27 +40,28 @@ jobs: with: python-version: ${{ matrix.python-version }} - #---------------------------------------------- - # ----- install & configure poetry ----- - #---------------------------------------------- + #------------------------------ + # install & configure poetry + #------------------------------ - name: Install Poetry uses: snok/install-poetry@v1 with: virtualenvs-create: true virtualenvs-in-project: true installer-parallel: true - #---------------------------------------------- - # load cached venv if cache exists - #---------------------------------------------- + + #------------------------------------ + # load cached venv if cache exists + #------------------------------------ - name: Load cached venv id: cached-poetry-dependencies uses: actions/cache@v4 with: path: .venv key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - #---------------------------------------------- - # install your root project, if required - #---------------------------------------------- + #------------------------ + # install your project + #------------------------ - name: Install library run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials From ad7b46a01f770f5362a1d9d26774d47286822330 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 15:20:50 +0100 Subject: [PATCH 38/43] Migrate optional groups to extras --- .github/workflows/build-docs.yml | 4 +- .github/workflows/nightly.yml | 4 +- .github/workflows/publish.yml | 2 + .github/workflows/pytest-legacy.yml | 4 +- .github/workflows/pytest.yml | 4 +- poetry.lock | 212 +++++++++++++++------------- pyproject.toml | 99 ++++++------- 7 files changed, 163 insertions(+), 166 deletions(-) diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml index 79af12c1e..2097e56ec 100644 --- a/.github/workflows/build-docs.yml +++ b/.github/workflows/build-docs.yml @@ -43,12 +43,12 @@ jobs: with: path: .venv key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - + #------------------------ # install root project #------------------------ - name: Install library - run: poetry install --no-interaction --with docs,optional_plotting,tutorials + run: poetry install --no-interaction --extras "docs optional_plotting tutorials" - name: Build the docs run: poetry run make --directory=docs html diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index 8c165a152..4a1d67175 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -51,7 +51,7 @@ jobs: # update dependencies to latest versions #------------------------------------------ - name: Update dependencies - run: poetry update --with docs,optional_io_formats,optional_plotting,tests,tutorials --lock + run: poetry update --lock #------------------------------------ # load cached venv if cache exists @@ -68,7 +68,7 @@ jobs: #------------------------------------------------ - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' - run: poetry install --no-interaction --with docs,optional_io_formats,optional_plotting,tests,tutorials --no-root + run: poetry install --no-interaction --extras "docs optional_io_formats optional_plotting tests tutorials" --no-root #------------------------ # install root project diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index efce8d801..40bcf8b57 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -28,8 +28,10 @@ jobs: virtualenvs-create: true virtualenvs-in-project: true installer-parallel: true + - name: Install poetry dynamic versioning plugin run: poetry self add "poetry-dynamic-versioning[plugin]" + - name: Build package run: poetry build diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 43e9b5237..202d13fe9 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -43,7 +43,7 @@ jobs: poetry add numpy@1.26.0 --lock poetry add pandas@2.1.2 --lock poetry add pint@0.13 --lock - poetry add xlrd@2.0.1 --group optional_io_formats --lock + poetry add xlrd@2.0.1 --extras optional_io_formats --optional --lock #------------------------------------ # load cached venv if cache exists @@ -60,7 +60,7 @@ jobs: #------------------------------------------------ - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' - run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials --no-root + run: poetry install --no-interaction --extras "optional_io_formats optional_plotting tests tutorials" --no-root #------------------------ # install root project diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 3b985e089..2863d472c 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -63,7 +63,7 @@ jobs: # install your project #------------------------ - name: Install library - run: poetry install --no-interaction --with optional_io_formats,optional_plotting,tests,tutorials + run: poetry install --no-interaction --extras "optional_io_formats optional_plotting tests tutorials" # run tests without Matplotlib & CodeCode tests on earlier Python versions - name: Test with pytest @@ -77,7 +77,7 @@ jobs: - name: Upload coverage report to Codecov if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' }} - uses: codecov/codecov-action@v3 + uses: codecov/codecov-action@v4 with: file: ./coverage.xml env_vars: ${{ matrix.os }} py${{ matrix.python-version }} diff --git a/poetry.lock b/poetry.lock index 0db4aeaed..978d9e271 100644 --- a/poetry.lock +++ b/poetry.lock @@ -4,7 +4,7 @@ name = "alabaster" version = "0.7.16" description = "A light, configurable Sphinx theme" -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, @@ -67,7 +67,7 @@ trio = ["trio (>=0.23)"] name = "appnope" version = "0.1.4" description = "Disable App Nap on macOS >= 10.9" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"}, @@ -78,7 +78,7 @@ files = [ name = "asttokens" version = "2.4.1" description = "Annotate AST trees with source code positions" -optional = false +optional = true python-versions = "*" files = [ {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"}, @@ -96,7 +96,7 @@ test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] name = "attrs" version = "23.2.0" description = "Classes Without Boilerplate" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"}, @@ -115,7 +115,7 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p name = "autodocsumm" version = "0.2.12" description = "Extended sphinx autodoc including automatic autosummaries" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "autodocsumm-0.2.12-py3-none-any.whl", hash = "sha256:b842b53c686c07a4f174721ca4e729b027367703dbf42e2508863a3c6d6c049c"}, @@ -129,7 +129,7 @@ Sphinx = ">=2.2,<8.0" name = "babel" version = "2.14.0" description = "Internationalization utilities" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "Babel-2.14.0-py3-none-any.whl", hash = "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"}, @@ -143,7 +143,7 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] name = "beautifulsoup4" version = "4.12.3" description = "Screen-scraping library" -optional = false +optional = true python-versions = ">=3.6.0" files = [ {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"}, @@ -164,7 +164,7 @@ lxml = ["lxml"] name = "bleach" version = "6.1.0" description = "An easy safelist-based HTML-sanitizing tool." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "bleach-6.1.0-py3-none-any.whl", hash = "sha256:3225f354cfc436b9789c66c4ee030194bee0568fbf9cbdad3bc8b5c26c5f12b6"}, @@ -182,7 +182,7 @@ css = ["tinycss2 (>=1.1.0,<1.3)"] name = "boto3" version = "1.34.56" description = "The AWS SDK for Python" -optional = false +optional = true python-versions = ">= 3.8" files = [ {file = "boto3-1.34.56-py3-none-any.whl", hash = "sha256:300888f0c1b6f32f27f85a9aa876f50f46514ec619647af7e4d20db74d339714"}, @@ -201,7 +201,7 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] name = "botocore" version = "1.34.56" description = "Low-level, data-driven core of boto 3." -optional = false +optional = true python-versions = ">= 3.8" files = [ {file = "botocore-1.34.56-py3-none-any.whl", hash = "sha256:fff66e22a5589c2d58fba57d1d95c334ce771895e831f80365f6cff6453285ec"}, @@ -220,7 +220,7 @@ crt = ["awscrt (==0.19.19)"] name = "cached-property" version = "1.5.2" description = "A decorator for caching properties in classes." -optional = false +optional = true python-versions = "*" files = [ {file = "cached-property-1.5.2.tar.gz", hash = "sha256:9fa5755838eecbb2d234c3aa390bd80fbd3ac6b6869109bfc1b499f7bd89a130"}, @@ -242,7 +242,7 @@ files = [ name = "cffi" version = "1.16.0" description = "Foreign Function Interface for Python calling C code." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "cffi-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:6b3d6606d369fc1da4fd8c357d026317fbb9c9b75d36dc16e90e84c26854b088"}, @@ -306,7 +306,7 @@ pycparser = "*" name = "chardet" version = "5.2.0" description = "Universal encoding detector for Python 3" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"}, @@ -452,7 +452,7 @@ files = [ name = "comm" version = "0.2.1" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "comm-0.2.1-py3-none-any.whl", hash = "sha256:87928485c0dfc0e7976fd89fc1e187023cf587e7c353e4a9b417555b44adf021"}, @@ -532,7 +532,7 @@ test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"] name = "coverage" version = "6.5.0" description = "Code coverage measurement for Python" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "coverage-6.5.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ef8674b0ee8cc11e2d574e3e2998aea5df5ab242e012286824ea3c6970580e53"}, @@ -597,7 +597,7 @@ toml = ["tomli"] name = "coveralls" version = "3.3.1" description = "Show coverage stats online via coveralls.io" -optional = false +optional = true python-versions = ">= 3.5" files = [ {file = "coveralls-3.3.1-py2.py3-none-any.whl", hash = "sha256:f42015f31d386b351d4226389b387ae173207058832fbf5c8ec4b40e27b16026"}, @@ -660,7 +660,7 @@ test = ["pandas[test]", "pre-commit", "pytest", "pytest-cov", "pytest-rerunfailu name = "datapackage" version = "1.15.2" description = "Utilities to work with Data Packages as defined on specs.frictionlessdata.io" -optional = false +optional = true python-versions = "*" files = [ {file = "datapackage-1.15.2-py2.py3-none-any.whl", hash = "sha256:5d429d566482ddb5e2424a4f6ac80782340fd2eb707595d601511d077d6caaba"}, @@ -686,7 +686,7 @@ develop = ["httpretty", "mock", "pylama", "pytest", "pytest-cov", "tableschema-s name = "debugpy" version = "1.8.1" description = "An implementation of the Debug Adapter Protocol for Python" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "debugpy-1.8.1-cp310-cp310-macosx_11_0_x86_64.whl", hash = "sha256:3bda0f1e943d386cc7a0e71bfa59f4137909e2ed947fb3946c506e113000f741"}, @@ -717,7 +717,7 @@ files = [ name = "decorator" version = "5.1.1" description = "Decorators for Humans" -optional = false +optional = true python-versions = ">=3.5" files = [ {file = "decorator-5.1.1-py3-none-any.whl", hash = "sha256:b8c3f85900b9dc423225913c5aace94729fe1fa9763b38939a95226f02d37186"}, @@ -728,7 +728,7 @@ files = [ name = "defusedxml" version = "0.7.1" description = "XML bomb protection for Python stdlib modules" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ {file = "defusedxml-0.7.1-py2.py3-none-any.whl", hash = "sha256:a352e7e428770286cc899e2542b6cdaedb2b4953ff269a210103ec58f6198a61"}, @@ -739,7 +739,7 @@ files = [ name = "docopt" version = "0.6.2" description = "Pythonic argument parser, that will make you smile" -optional = false +optional = true python-versions = "*" files = [ {file = "docopt-0.6.2.tar.gz", hash = "sha256:49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491"}, @@ -749,7 +749,7 @@ files = [ name = "docutils" version = "0.20.1" description = "Docutils -- Python Documentation Utilities" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"}, @@ -785,7 +785,7 @@ test = ["pytest (>=6)"] name = "executing" version = "2.0.1" description = "Get the currently executing AST node of a frame, and other information" -optional = false +optional = true python-versions = ">=3.5" files = [ {file = "executing-2.0.1-py2.py3-none-any.whl", hash = "sha256:eac49ca94516ccc753f9fb5ce82603156e590b27525a8bc32cce8ae302eb61bc"}, @@ -799,7 +799,7 @@ tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipyth name = "fake-useragent" version = "1.4.0" description = "Up-to-date simple useragent faker with real world database" -optional = false +optional = true python-versions = "*" files = [ {file = "fake-useragent-1.4.0.tar.gz", hash = "sha256:5426e4015d8ccc5bb25f64d3dfcfd3915eba30ffebd31b86b60dc7a4c5d65528"}, @@ -829,7 +829,7 @@ all = ["email-validator (>=2.0.0)", "httpx (>=0.23.0)", "itsdangerous (>=1.1.0)" name = "fastjsonschema" version = "2.19.1" description = "Fastest Python implementation of JSON schema" -optional = false +optional = true python-versions = "*" files = [ {file = "fastjsonschema-2.19.1-py3-none-any.whl", hash = "sha256:3672b47bc94178c9f23dbb654bf47440155d4db9df5f7bc47643315f9c405cd0"}, @@ -1137,7 +1137,7 @@ files = [ name = "ijson" version = "3.2.3" description = "Iterative JSON parser with standard Python iterator interfaces" -optional = false +optional = true python-versions = "*" files = [ {file = "ijson-3.2.3-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:0a4ae076bf97b0430e4e16c9cb635a6b773904aec45ed8dcbc9b17211b8569ba"}, @@ -1235,7 +1235,7 @@ files = [ name = "imagesize" version = "1.4.1" description = "Getting image size from png/jpeg/jpeg2000/gif file" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ {file = "imagesize-1.4.1-py2.py3-none-any.whl", hash = "sha256:0d8d18d08f840c19d0ee7ca1fd82490fdc3729b7ac93f49870406ddde8ef8d8b"}, @@ -1265,7 +1265,7 @@ testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"}, @@ -1276,7 +1276,7 @@ files = [ name = "ipykernel" version = "6.29.3" description = "IPython Kernel for Jupyter" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "ipykernel-6.29.3-py3-none-any.whl", hash = "sha256:5aa086a4175b0229d4eca211e181fb473ea78ffd9869af36ba7694c947302a21"}, @@ -1309,7 +1309,7 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio name = "ipython" version = "8.22.2" description = "IPython: Productive Interactive Computing" -optional = false +optional = true python-versions = ">=3.10" files = [ {file = "ipython-8.22.2-py3-none-any.whl", hash = "sha256:3c86f284c8f3d8f2b6c662f885c4889a91df7cd52056fd02b7d8d6195d7f56e9"}, @@ -1345,7 +1345,7 @@ test-extra = ["curio", "ipython[test]", "matplotlib (!=3.2.0)", "nbformat", "num name = "isodate" version = "0.6.1" description = "An ISO 8601 date/time/duration parser and formatter" -optional = false +optional = true python-versions = "*" files = [ {file = "isodate-0.6.1-py2.py3-none-any.whl", hash = "sha256:0751eece944162659049d35f4f549ed815792b38793f07cf73381c1c87cbed96"}, @@ -1390,7 +1390,7 @@ typer = ">=0.9.0,<0.10.0" name = "jedi" version = "0.19.1" description = "An autocompletion tool for Python that can be used for text editors." -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "jedi-0.19.1-py2.py3-none-any.whl", hash = "sha256:e983c654fe5c02867aef4cdfce5a2fbb4a50adc0af145f70504238f18ef5e7e0"}, @@ -1409,7 +1409,7 @@ testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] name = "jinja2" version = "3.1.3" description = "A very fast and expressive template engine." -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "Jinja2-3.1.3-py3-none-any.whl", hash = "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa"}, @@ -1426,7 +1426,7 @@ i18n = ["Babel (>=2.7)"] name = "jmespath" version = "1.0.1" description = "JSON Matching Expressions" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "jmespath-1.0.1-py3-none-any.whl", hash = "sha256:02e2e4cc71b5bcab88332eebf907519190dd9e6e82107fa7f83b1003a6252980"}, @@ -1437,7 +1437,7 @@ files = [ name = "jsonlines" version = "4.0.0" description = "Library with helpers for the jsonlines file format" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jsonlines-4.0.0-py3-none-any.whl", hash = "sha256:185b334ff2ca5a91362993f42e83588a360cf95ce4b71a73548502bda52a7c55"}, @@ -1451,7 +1451,7 @@ attrs = ">=19.2.0" name = "jsonpointer" version = "2.4" description = "Identify specific nodes in a JSON document (RFC 6901)" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*" files = [ {file = "jsonpointer-2.4-py2.py3-none-any.whl", hash = "sha256:15d51bba20eea3165644553647711d150376234112651b4f1811022aecad7d7a"}, @@ -1462,7 +1462,7 @@ files = [ name = "jsonschema" version = "4.21.1" description = "An implementation of JSON Schema validation for Python" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jsonschema-4.21.1-py3-none-any.whl", hash = "sha256:7996507afae316306f9e2290407761157c6f78002dcf7419acb99822143d1c6f"}, @@ -1483,7 +1483,7 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "jsonschema-specifications" version = "2023.12.1" description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jsonschema_specifications-2023.12.1-py3-none-any.whl", hash = "sha256:87e4fdf3a94858b8a2ba2778d9ba57d8a9cafca7c7489c46ba0d30a8bc6a9c3c"}, @@ -1497,7 +1497,7 @@ referencing = ">=0.31.0" name = "jupyter-client" version = "8.6.0" description = "Jupyter protocol implementation and client libraries" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter_client-8.6.0-py3-none-any.whl", hash = "sha256:909c474dbe62582ae62b758bca86d6518c85234bdee2d908c778db6d72f39d99"}, @@ -1519,7 +1519,7 @@ test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pyt name = "jupyter-core" version = "5.7.1" description = "Jupyter core package. A base package on which Jupyter projects rely." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyter_core-5.7.1-py3-none-any.whl", hash = "sha256:c65c82126453a723a2804aa52409930434598fd9d35091d63dfb919d2b765bb7"}, @@ -1539,7 +1539,7 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] name = "jupyterlab-pygments" version = "0.3.0" description = "Pygments theme using JupyterLab CSS variables" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "jupyterlab_pygments-0.3.0-py3-none-any.whl", hash = "sha256:841a89020971da1d8693f1a99997aefc5dc424bb1b251fd6322462a1b8842780"}, @@ -1550,7 +1550,7 @@ files = [ name = "kaleido" version = "0.2.1" description = "Static image export for web-based visualization libraries with zero dependencies" -optional = false +optional = true python-versions = "*" files = [ {file = "kaleido-0.2.1-py2.py3-none-macosx_10_11_x86_64.whl", hash = "sha256:ca6f73e7ff00aaebf2843f73f1d3bacde1930ef5041093fe76b83a15785049a7"}, @@ -1678,7 +1678,7 @@ files = [ name = "linear-tsv" version = "1.1.0" description = "Line-oriented, tab-separated value format" -optional = false +optional = true python-versions = "*" files = [ {file = "linear-tsv-1.1.0.tar.gz", hash = "sha256:b504d78f4075615ae75de86a16e5680701a441fc84da2a2cf9f94351ab1ccbf5"}, @@ -1705,7 +1705,7 @@ files = [ name = "lxml" version = "5.1.0" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "lxml-5.1.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:704f5572ff473a5f897745abebc6df40f22d4133c1e0a1f124e4f2bd3330ff7e"}, @@ -1958,7 +1958,7 @@ python-dateutil = ">=2.7" name = "matplotlib-inline" version = "0.1.6" description = "Inline Matplotlib backend for Jupyter" -optional = false +optional = true python-versions = ">=3.5" files = [ {file = "matplotlib-inline-0.1.6.tar.gz", hash = "sha256:f887e5f10ba98e8d2b150ddcf4702c1e5f8b3a20005eb0f74bfdbd360ee6f304"}, @@ -1983,7 +1983,7 @@ files = [ name = "mistune" version = "3.0.2" description = "A sane and fast Markdown parser with useful plugins and renderers" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "mistune-3.0.2-py3-none-any.whl", hash = "sha256:71481854c30fdbc938963d3605b72501f5c10a9320ecd412c121c163a1c7d205"}, @@ -2063,7 +2063,7 @@ files = [ name = "nbclient" version = "0.9.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." -optional = false +optional = true python-versions = ">=3.8.0" files = [ {file = "nbclient-0.9.0-py3-none-any.whl", hash = "sha256:a3a1ddfb34d4a9d17fc744d655962714a866639acd30130e9be84191cd97cd15"}, @@ -2085,7 +2085,7 @@ test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>= name = "nbconvert" version = "7.16.2" description = "Converting Jupyter Notebooks (.ipynb files) to other formats. Output formats include asciidoc, html, latex, markdown, pdf, py, rst, script. nbconvert can be used both as a Python library (`import nbconvert`) or as a command line tool (invoked as `jupyter nbconvert ...`)." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "nbconvert-7.16.2-py3-none-any.whl", hash = "sha256:0c01c23981a8de0220255706822c40b751438e32467d6a686e26be08ba784382"}, @@ -2122,7 +2122,7 @@ webpdf = ["playwright"] name = "nbformat" version = "5.9.2" description = "The Jupyter Notebook format" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "nbformat-5.9.2-py3-none-any.whl", hash = "sha256:1c5172d786a41b82bcfd0c23f9e6b6f072e8fb49c39250219e4acfff1efe89e9"}, @@ -2143,7 +2143,7 @@ test = ["pep440", "pre-commit", "pytest", "testpath"] name = "nbsphinx" version = "0.9.3" description = "Jupyter Notebook Tools for Sphinx" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "nbsphinx-0.9.3-py3-none-any.whl", hash = "sha256:6e805e9627f4a358bd5720d5cbf8bf48853989c79af557afd91a5f22e163029f"}, @@ -2162,7 +2162,7 @@ traitlets = ">=5" name = "nest-asyncio" version = "1.6.0" description = "Patch asyncio to allow nested event loops" -optional = false +optional = true python-versions = ">=3.5" files = [ {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"}, @@ -2218,7 +2218,7 @@ files = [ name = "numpydoc" version = "1.6.0" description = "Sphinx extension to support docstrings in Numpy format" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "numpydoc-1.6.0-py3-none-any.whl", hash = "sha256:b6ddaa654a52bdf967763c1e773be41f1c3ae3da39ee0de973f2680048acafaa"}, @@ -2333,7 +2333,7 @@ xml = ["lxml (>=4.8.0)"] name = "pandas-datareader" version = "0.10.0" description = "Data readers extracted from the pandas codebase,should be compatible with recent pandas versions" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "pandas-datareader-0.10.0.tar.gz", hash = "sha256:9fc3c63d39bc0c10c2683f1c6d503ff625020383e38f6cbe14134826b454d5a6"}, @@ -2384,7 +2384,7 @@ strategies = ["hypothesis (>=5.41.1)"] name = "pandocfilters" version = "1.5.1" description = "Utilities for writing pandoc filters in python" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ {file = "pandocfilters-1.5.1-py2.py3-none-any.whl", hash = "sha256:93be382804a9cdb0a7267585f157e5d1731bbe5545a85b268d6f5fe6232de2bc"}, @@ -2395,7 +2395,7 @@ files = [ name = "parso" version = "0.8.3" description = "A Python Parser" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "parso-0.8.3-py2.py3-none-any.whl", hash = "sha256:c001d4636cd3aecdaf33cbb40aebb59b094be2a74c556778ef5576c175e19e75"}, @@ -2428,7 +2428,7 @@ complete = ["blosc", "numpy (>=1.9.0)", "pandas (>=0.19.0)", "pyzmq"] name = "pexpect" version = "4.9.0" description = "Pexpect allows easy control of interactive console applications." -optional = false +optional = true python-versions = "*" files = [ {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"}, @@ -2553,7 +2553,7 @@ xarray = ["xarray"] name = "platformdirs" version = "4.2.0" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "platformdirs-4.2.0-py3-none-any.whl", hash = "sha256:0614df2a2f37e1a662acbd8e2b25b92ccf8632929bc6d43467e17fe89c75e068"}, @@ -2568,7 +2568,7 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest- name = "plotly" version = "5.19.0" description = "An open-source, interactive data visualization library for Python" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "plotly-5.19.0-py3-none-any.whl", hash = "sha256:906abcc5f15945765328c5d47edaa884bc99f5985fbc61e8cd4dc361f4ff8f5a"}, @@ -2583,7 +2583,7 @@ tenacity = ">=6.2.0" name = "pluggy" version = "1.4.0" description = "plugin and hook calling mechanisms for python" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "pluggy-1.4.0-py3-none-any.whl", hash = "sha256:7db9f7b503d67d1c5b95f59773ebb58a8c1c288129a88665838012cfb07b8981"}, @@ -2598,7 +2598,7 @@ testing = ["pytest", "pytest-benchmark"] name = "pooch" version = "1.8.1" description = "\"Pooch manages your Python library's sample data files: it automatically downloads and stores them in a local directory, with support for versioning and corruption checks.\"" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "pooch-1.8.1-py3-none-any.whl", hash = "sha256:6b56611ac320c239faece1ac51a60b25796792599ce5c0b1bb87bf01df55e0a9"}, @@ -2619,7 +2619,7 @@ xxhash = ["xxhash (>=1.4.3)"] name = "prompt-toolkit" version = "3.0.43" description = "Library for building powerful interactive command lines in Python" -optional = false +optional = true python-versions = ">=3.7.0" files = [ {file = "prompt_toolkit-3.0.43-py3-none-any.whl", hash = "sha256:a11a29cb3bf0a28a387fe5122cdb649816a957cd9261dcedf8c9f1fef33eacf6"}, @@ -2633,7 +2633,7 @@ wcwidth = "*" name = "psutil" version = "5.9.8" description = "Cross-platform lib for process and system monitoring in Python." -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ {file = "psutil-5.9.8-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:26bd09967ae00920df88e0352a91cff1a78f8d69b3ecabbfe733610c0af486c8"}, @@ -2759,7 +2759,7 @@ files = [ name = "ptyprocess" version = "0.7.0" description = "Run a subprocess in a pseudo terminal" -optional = false +optional = true python-versions = "*" files = [ {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"}, @@ -2770,7 +2770,7 @@ files = [ name = "pure-eval" version = "0.2.2" description = "Safely evaluate AST nodes without side effects" -optional = false +optional = true python-versions = "*" files = [ {file = "pure_eval-0.2.2-py3-none-any.whl", hash = "sha256:01eaab343580944bc56080ebe0a674b39ec44a945e6d09ba7db3cb8cec289350"}, @@ -2784,7 +2784,7 @@ tests = ["pytest"] name = "pyarrow" version = "15.0.0" description = "Python library for Apache Arrow" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "pyarrow-15.0.0-cp310-cp310-macosx_10_15_x86_64.whl", hash = "sha256:0a524532fd6dd482edaa563b686d754c70417c2f72742a8c990b322d4c03a15d"}, @@ -2832,7 +2832,7 @@ numpy = ">=1.16.6,<2" name = "pycparser" version = "2.21" description = "C parser in Python" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ {file = "pycparser-2.21-py2.py3-none-any.whl", hash = "sha256:8ee45429555515e1f6b185e78100aea234072576aa43ab53aefcae078162fca9"}, @@ -3004,7 +3004,7 @@ tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"] name = "pypandoc" version = "1.13" description = "Thin wrapper for pandoc." -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "pypandoc-1.13-py3-none-any.whl", hash = "sha256:4c7d71bf2f1ed122aac287113b5c4d537a33bbc3c1df5aed11a7d4a7ac074681"}, @@ -3029,7 +3029,7 @@ diagrams = ["jinja2", "railroad-diagrams"] name = "pytest" version = "8.0.2" description = "pytest: simple powerful testing with Python" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "pytest-8.0.2-py3-none-any.whl", hash = "sha256:edfaaef32ce5172d5466b5127b42e0d6d35ebbe4453f0e3505d96afd93f6b096"}, @@ -3051,7 +3051,7 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no name = "pytest-cov" version = "4.1.0" description = "Pytest plugin for measuring coverage." -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "pytest-cov-4.1.0.tar.gz", hash = "sha256:3904b13dfbfec47f003b8e77fd5b589cd11904a21ddf1ab38a64f204d6a10ef6"}, @@ -3069,7 +3069,7 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale name = "pytest-mpl" version = "0.17.0" description = "pytest plugin to help with testing figures output from Matplotlib" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "pytest-mpl-0.17.0.tar.gz", hash = "sha256:fbef05d7e664b4b33452fb698ac188e522791f327de34e7ea37dbdfe9d52cac6"}, @@ -3130,7 +3130,7 @@ files = [ name = "pywin32" version = "306" description = "Python for Window Extensions" -optional = false +optional = true python-versions = "*" files = [ {file = "pywin32-306-cp310-cp310-win32.whl", hash = "sha256:06d3420a5155ba65f0b72f2699b5bacf3109f36acbe8923765c22938a69dfc8d"}, @@ -3212,7 +3212,7 @@ files = [ name = "pyzmq" version = "25.1.2" description = "Python bindings for 0MQ" -optional = false +optional = true python-versions = ">=3.6" files = [ {file = "pyzmq-25.1.2-cp310-cp310-macosx_10_15_universal2.whl", hash = "sha256:e624c789359f1a16f83f35e2c705d07663ff2b4d4479bad35621178d8f0f6ea4"}, @@ -3317,7 +3317,7 @@ cffi = {version = "*", markers = "implementation_name == \"pypy\""} name = "referencing" version = "0.33.0" description = "JSON Referencing + Python" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "referencing-0.33.0-py3-none-any.whl", hash = "sha256:39240f2ecc770258f28b642dd47fd74bc8b02484de54e1882b74b35ebd779bd5"}, @@ -3353,7 +3353,7 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "rfc3986" version = "2.0.0" description = "Validating URI References per RFC 3986" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "rfc3986-2.0.0-py2.py3-none-any.whl", hash = "sha256:50b1502b60e289cb37883f3dfd34532b8873c7de9f49bb546641ce9cbd256ebd"}, @@ -3385,7 +3385,7 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"] name = "rpds-py" version = "0.18.0" description = "Python bindings to Rust's persistent data structures (rpds)" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "rpds_py-0.18.0-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:5b4e7d8d6c9b2e8ee2d55c90b59c707ca59bc30058269b3db7b1f8df5763557e"}, @@ -3493,7 +3493,7 @@ files = [ name = "ruff" version = "0.3.0" description = "An extremely fast Python linter and code formatter, written in Rust." -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "ruff-0.3.0-py3-none-macosx_10_12_x86_64.macosx_11_0_arm64.macosx_10_12_universal2.whl", hash = "sha256:7deb528029bacf845bdbb3dbb2927d8ef9b4356a5e731b10eef171e3f0a85944"}, @@ -3519,7 +3519,7 @@ files = [ name = "s3transfer" version = "0.10.0" description = "An Amazon S3 Transfer Manager" -optional = false +optional = true python-versions = ">= 3.8" files = [ {file = "s3transfer-0.10.0-py3-none-any.whl", hash = "sha256:3cdb40f5cfa6966e812209d0994f2a4709b561c88e90cf00c2696d2df4e56b2e"}, @@ -3621,7 +3621,7 @@ files = [ name = "snowballstemmer" version = "2.2.0" description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." -optional = false +optional = true python-versions = "*" files = [ {file = "snowballstemmer-2.2.0-py2.py3-none-any.whl", hash = "sha256:c8e1716e83cc398ae16824e5572ae04e0d9fc2c6b985fb0f900f5f0c96ecba1a"}, @@ -3632,7 +3632,7 @@ files = [ name = "soupsieve" version = "2.5" description = "A modern CSS selector implementation for Beautiful Soup." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "soupsieve-2.5-py3-none-any.whl", hash = "sha256:eaa337ff55a1579b6549dc679565eac1e3d000563bcb1c8ab0d0fefbc0c2cdc7"}, @@ -3643,7 +3643,7 @@ files = [ name = "sphinx" version = "7.2.6" description = "Python documentation generator" -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "sphinx-7.2.6-py3-none-any.whl", hash = "sha256:1e09160a40b956dc623c910118fa636da93bd3ca0b9876a7b3df90f07d691560"}, @@ -3677,7 +3677,7 @@ test = ["cython (>=3.0)", "filelock", "html5lib", "pytest (>=4.6)", "setuptools name = "sphinx-gallery" version = "0.15.0" description = "A `Sphinx `_ extension that builds an HTML gallery of examples from any set of Python scripts." -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "sphinx-gallery-0.15.0.tar.gz", hash = "sha256:7217fe98f8c4cce248db798c48f34183e4cdb277d2381e188182f92a14ec26b7"}, @@ -3698,7 +3698,7 @@ show-memory = ["memory-profiler"] name = "sphinxcontrib-applehelp" version = "1.0.8" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "sphinxcontrib_applehelp-1.0.8-py3-none-any.whl", hash = "sha256:cb61eb0ec1b61f349e5cc36b2028e9e7ca765be05e49641c97241274753067b4"}, @@ -3714,7 +3714,7 @@ test = ["pytest"] name = "sphinxcontrib-devhelp" version = "1.0.6" description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents" -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "sphinxcontrib_devhelp-1.0.6-py3-none-any.whl", hash = "sha256:6485d09629944511c893fa11355bda18b742b83a2b181f9a009f7e500595c90f"}, @@ -3730,7 +3730,7 @@ test = ["pytest"] name = "sphinxcontrib-htmlhelp" version = "2.0.5" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl", hash = "sha256:393f04f112b4d2f53d93448d4bce35842f62b307ccdc549ec1585e950bc35e04"}, @@ -3746,7 +3746,7 @@ test = ["html5lib", "pytest"] name = "sphinxcontrib-jsmath" version = "1.0.1" description = "A sphinx extension which renders display math in HTML via JavaScript" -optional = false +optional = true python-versions = ">=3.5" files = [ {file = "sphinxcontrib-jsmath-1.0.1.tar.gz", hash = "sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"}, @@ -3760,7 +3760,7 @@ test = ["flake8", "mypy", "pytest"] name = "sphinxcontrib-qthelp" version = "1.0.7" description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents" -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "sphinxcontrib_qthelp-1.0.7-py3-none-any.whl", hash = "sha256:e2ae3b5c492d58fcbd73281fbd27e34b8393ec34a073c792642cd8e529288182"}, @@ -3776,7 +3776,7 @@ test = ["pytest"] name = "sphinxcontrib-serializinghtml" version = "1.1.10" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)" -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl", hash = "sha256:326369b8df80a7d2d8d7f99aa5ac577f51ea51556ed974e7716cfd4fca3f6cb7"}, @@ -3908,7 +3908,7 @@ url = ["furl (>=0.4.1)"] name = "stack-data" version = "0.6.3" description = "Extract data from python stack frames and tracebacks for informative displays" -optional = false +optional = true python-versions = "*" files = [ {file = "stack_data-0.6.3-py3-none-any.whl", hash = "sha256:d5558e0c25a4cb0853cddad3d77da9891a08cb85dd9f9f91b9f8cd66e511e695"}, @@ -3944,7 +3944,7 @@ full = ["httpx (>=0.22.0)", "itsdangerous", "jinja2", "python-multipart (>=0.0.7 name = "tableschema" version = "1.20.2" description = "A utility library for working with Table Schema in Python" -optional = false +optional = true python-versions = "*" files = [ {file = "tableschema-1.20.2-py2.py3-none-any.whl", hash = "sha256:676948747ec8964c6e27e12ce45e203201191bb7e81a26f2eb09a1fdbe130d5c"}, @@ -3970,7 +3970,7 @@ develop = ["mock", "pylama", "pytest", "pytest-cov"] name = "tabulate" version = "0.9.0" description = "Pretty-print tabular data" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "tabulate-0.9.0-py3-none-any.whl", hash = "sha256:024ca478df22e9340661486f85298cff5f6dcdba14f3813e8830015b9ed1948f"}, @@ -3984,7 +3984,7 @@ widechars = ["wcwidth"] name = "tabulator" version = "1.53.5" description = "Consistent interface for stream reading and writing tabular data (csv/xls/json/etc)" -optional = false +optional = true python-versions = "*" files = [ {file = "tabulator-1.53.5-py2.py3-none-any.whl", hash = "sha256:6de83026f9dc8ac34dbc9e60cced1785ed2f4022ae0250eeaa59e92b5090f477"}, @@ -4016,7 +4016,7 @@ ods = ["ezodf (>=0.3)", "lxml (>=3.0)"] name = "tenacity" version = "8.2.3" description = "Retry code until it succeeds" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "tenacity-8.2.3-py3-none-any.whl", hash = "sha256:ce510e327a630c9e1beaf17d42e6ffacc88185044ad85cf74c0a8887c6a0f88c"}, @@ -4030,7 +4030,7 @@ doc = ["reno", "sphinx", "tornado (>=4.5)"] name = "tinycss2" version = "1.2.1" description = "A tiny CSS parser" -optional = false +optional = true python-versions = ">=3.7" files = [ {file = "tinycss2-1.2.1-py3-none-any.whl", hash = "sha256:2b80a96d41e7c3914b8cda8bc7f705a4d9c49275616e886103dd839dfc847847"}, @@ -4081,7 +4081,7 @@ files = [ name = "tornado" version = "6.4" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." -optional = false +optional = true python-versions = ">= 3.8" files = [ {file = "tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl", hash = "sha256:02ccefc7d8211e5a7f9e8bc3f9e5b0ad6262ba2fbb683a6443ecc804e5224ce0"}, @@ -4101,7 +4101,7 @@ files = [ name = "traitlets" version = "5.14.1" description = "Traitlets Python configuration system" -optional = false +optional = true python-versions = ">=3.8" files = [ {file = "traitlets-5.14.1-py3-none-any.whl", hash = "sha256:2e5a030e6eff91737c643231bfcf04a65b0132078dad75e4936700b213652e74"}, @@ -4116,7 +4116,7 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0, name = "treelib" version = "1.7.0" description = "A Python implementation of tree structure." -optional = false +optional = true python-versions = "*" files = [ {file = "treelib-1.7.0-py3-none-any.whl", hash = "sha256:c37795eaba19f73f3e1a905ef3f4f0cab660dc7617126e8ae99391e25c755416"}, @@ -4206,7 +4206,7 @@ files = [ name = "unfccc-di-api" version = "4.0.1" description = "Python wrapper around the Flexible Query API of the UNFCCC." -optional = false +optional = true python-versions = ">=3.9" files = [ {file = "unfccc_di_api-4.0.1-py3-none-any.whl", hash = "sha256:acc7ae9213ec1ac852c90843e7e5113ca394a2964ae367370d9c3d5925f483f2"}, @@ -4229,7 +4229,7 @@ test = ["pytest"] name = "unicodecsv" version = "0.14.1" description = "Python2's stdlib csv module is nice, but it doesn't support unicode. This module is a drop-in replacement which *does*." -optional = false +optional = true python-versions = "*" files = [ {file = "unicodecsv-0.14.1.tar.gz", hash = "sha256:018c08037d48649a0412063ff4eda26eaa81eff1546dbffa51fa5293276ff7fc"}, @@ -4256,7 +4256,7 @@ zstd = ["zstandard (>=0.18.0)"] name = "wcwidth" version = "0.2.13" description = "Measures the displayed width of unicode strings in a terminal" -optional = false +optional = true python-versions = "*" files = [ {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, @@ -4267,7 +4267,7 @@ files = [ name = "webencodings" version = "0.5.1" description = "Character encoding aliases for legacy web content" -optional = false +optional = true python-versions = "*" files = [ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"}, @@ -4371,7 +4371,7 @@ files = [ name = "xlrd" version = "2.0.1" description = "Library for developers to extract data from Microsoft Excel (tm) .xls spreadsheet files" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ {file = "xlrd-2.0.1-py2.py3-none-any.whl", hash = "sha256:6a33ee89877bd9abc1158129f6e94be74e2679636b8a205b43b85206c3f0bbdd"}, @@ -4409,7 +4409,15 @@ files = [ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +[extras] +dev = ["ruff"] +docs = ["autodocsumm", "kaleido", "nbsphinx", "numpydoc", "pillow", "sphinx", "sphinx-gallery"] +optional-io-formats = ["datapackage", "pandas-datareader", "unfccc_di_api", "xlrd"] +optional-plotting = ["plotly"] +tests = ["coverage", "coveralls", "pytest", "pytest-cov", "pytest-mpl"] +tutorials = ["ipykernel", "jupyter_client", "nbconvert", "nbformat", "pypandoc"] + [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.13" -content-hash = "0f21290a45d050f5a117be2cb6b2df932d87e859414c7d1aa9253ec4a4317c48" +content-hash = "fe71fd4202d4bac657a0489418daaf4530b5053a3ebf34abd835adcbaf3da686" diff --git a/pyproject.toml b/pyproject.toml index ec7f6b8a2..b2da98390 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -43,74 +43,64 @@ classifiers = [ # Please also add a section "Dependency changes" to the release notes [tool.poetry.dependencies] python = ">=3.10, <3.13" +autodocsumm = { version = ">=0.2.12", optional = true } +coverage = { version = ">=6.5.0", optional = true } +coveralls = { version = ">=3.3.1", optional = true } +datapackage = { version = ">=1.15.2", optional = true } iam-units = ">=2020.4.21" +ipykernel = { version = ">=6.29.3", optional = true } ixmp4 = ">=0.7.1" +jupyter_client = { version = ">=8.6.0", optional = true } +kaleido = { version = ">=0.2.0, <0.2.1.post", optional = true } matplotlib = ">=3.6.0" +nbconvert = { version = ">= 7.3", optional = true } +nbformat = { version = ">=5.9.2", optional = true } +nbsphinx = { version = ">=0.9.3", optional = true } numpy = ">=1.26.0" +numpydoc = { version = ">=1.6.0", optional = true } openpyxl = ">=3.1.2" pandas = ">=2.1.2" +pandas-datareader = { version = ">=0.10.0", optional = true } +pillow = { version = ">=10.2.0", optional = true } Pint = ">=0.13" +plotly = { version = ">=5.19.0", optional = true } +pypandoc = { version = ">=1.13", optional = true } +pytest = { version = ">=8.0.2", optional = true } +pytest-cov = { version = ">=4.1.0", optional = true } +pytest-mpl = { version = ">=0.17.0", optional = true } PyYAML = ">=6.0.1" +ruff = { version = ">=0.2.1", optional = true } scipy = ">=1.10.0" seaborn = ">=0.11" six = ">=1.16.0" +sphinx = { version = ">=7.2.6", optional = true } +sphinx-gallery = { version = ">=0.15.0", optional = true } +unfccc_di_api = { version = ">=3.0.1", optional = true } wquantiles = ">=0.6" +xlrd = { version = ">=2.0.1", optional = true } XlsxWriter = ">=3.2.0" -[tool.poetry.group.dev] -optional = true - -[tool.poetry.group.dev.dependencies] -ruff = ">=0.2.1" - -[tool.poetry.group.docs] -optional = true - -[tool.poetry.group.docs.dependencies] +[tool.poetry.extras] +dev = ["ruff"] # docs requires 'tutorials' -autodocsumm = ">=0.2.12" -kaleido = ">=0.2.0, <0.2.1.post" -nbsphinx = ">=0.9.3" -numpydoc = ">=1.6.0" -pillow = ">=10.2.0" -sphinx = ">=7.2.6" -sphinx-gallery = ">=0.15.0" - -[tool.poetry.group.optional_io_formats] -optional = true - -[tool.poetry.group.optional_io_formats.dependencies] -datapackage = ">=1.15.2" -pandas-datareader = ">=0.10.0" -unfccc_di_api = ">=3.0.1" -xlrd = ">=2.0.1" - -[tool.poetry.group.optional_plotting] -optional = true - -[tool.poetry.group.optional_plotting.dependencies] -plotly = ">=5.19.0" - -[tool.poetry.group.tests] -optional = true - -[tool.poetry.group.tests.dependencies] -coverage = ">=6.5.0" -coveralls = ">=3.3.1" -pytest = ">=8.0.2" -pytest-cov = ">=4.1.0" -pytest-mpl = ">=0.17.0" - -[tool.poetry.group.tutorials] -optional = true - -[tool.poetry.group.tutorials.dependencies] -ipykernel = ">=6.29.3" -jupyter_client = ">=8.6.0" -nbconvert = ">= 7.3" -nbformat = ">=5.9.2" -pypandoc = ">=1.13" - +docs = [ + "autodocsumm", + "kaleido", + "nbsphinx", + "numpydoc", + "pillow", + "sphinx", + "sphinx-gallery", +] +optional_io_formats = [ + "datapackage", + "pandas-datareader", + "unfccc_di_api", + "xlrd", +] +optional_plotting = ["plotly"] +tests = ["coverage", "coveralls", "pytest", "pytest-cov", "pytest-mpl"] +tutorials = ["ipykernel", "jupyter_client", "nbconvert", "nbformat", "pypandoc"] [build-system] build-backend = "poetry_dynamic_versioning.backend" @@ -132,11 +122,9 @@ exclude = [ "venv", ] extend-include = ["*.ipynb"] - # Same as Black. line-length = 88 - [tool.ruff.lint] select = ["C9", "E", "F", "I", "W"] ignore = ["B008"] @@ -144,7 +132,6 @@ ignore = ["B008"] [tool.ruff.lint.per-file-ignores] "__init__.py" = ["F401"] - [tool.ruff.format] # Enable auto-formatting of code examples in docstrings. Markdown, # reStructuredText code/literal blocks and doctests are all supported. From 40b6165721164d0f67ece03d1781d9464dc23c77 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 15:26:50 +0100 Subject: [PATCH 39/43] Remove import from setuptools --- pyam/__init__.py | 13 ++++--------- 1 file changed, 4 insertions(+), 9 deletions(-) diff --git a/pyam/__init__.py b/pyam/__init__.py index fd06a9eb8..117dfa0c5 100644 --- a/pyam/__init__.py +++ b/pyam/__init__.py @@ -2,8 +2,6 @@ from importlib.metadata import PackageNotFoundError, version from pathlib import Path -from setuptools_scm import get_version - from pyam.core import ( IamDataFrame, categorize, @@ -25,13 +23,10 @@ from pyam.utils import IAMC_IDX # noqa: F401 try: - __version__ = get_version(root=Path(__file__).parents[1]) -except LookupError: - try: - __version__ = version("pyam-iamc") - # the pyam package is distributed under different names on pypi and conda - except PackageNotFoundError: - __version__ = version("pyam") + __version__ = version("pyam-iamc") +# the pyam package is distributed under different names on pypi and conda +except PackageNotFoundError: + __version__ = version("pyam") # Set up logging consistent with the ixmp4 "production" logging configuration From 9a38d44ef27fc8c40bf7a655810405a0c6dc896e Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 15:38:31 +0100 Subject: [PATCH 40/43] Install library with --only-root --- .github/workflows/pytest-legacy.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 202d13fe9..ffc8ced92 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -66,7 +66,7 @@ jobs: # install root project #------------------------ - name: Install library - run: poetry install --no-interaction + run: poetry install --no-interaction --only-root - name: Test with pytest run: poetry run pytest tests From 46baa6fc1a3682dae496a2811c6519cfd41f7126 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Wed, 6 Mar 2024 15:49:33 +0100 Subject: [PATCH 41/43] Specify extras for only-root install --- .github/workflows/nightly.yml | 2 +- .github/workflows/pytest-legacy.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/nightly.yml b/.github/workflows/nightly.yml index 4a1d67175..9573fa975 100644 --- a/.github/workflows/nightly.yml +++ b/.github/workflows/nightly.yml @@ -74,7 +74,7 @@ jobs: # install root project #------------------------ - name: Install library - run: poetry install --no-interaction --only-root + run: poetry install --no-interaction --extras "optional_io_formats optional_plotting tests tutorials" --only-root - name: Test with pytest (including Matplotlib) run: poetry run pytest tests --mpl diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index ffc8ced92..30223aff3 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -66,7 +66,7 @@ jobs: # install root project #------------------------ - name: Install library - run: poetry install --no-interaction --only-root + run: poetry install --no-interaction --extras "optional_io_formats optional_plotting tests tutorials" --only-root - name: Test with pytest run: poetry run pytest tests From 2eb60a52deb55a301559a1c190d7c639c8d9fcf1 Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Thu, 7 Mar 2024 10:16:05 +0100 Subject: [PATCH 42/43] Remove erroneous --extras --- .github/workflows/pytest-legacy.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pytest-legacy.yml b/.github/workflows/pytest-legacy.yml index 30223aff3..cd87d7edc 100644 --- a/.github/workflows/pytest-legacy.yml +++ b/.github/workflows/pytest-legacy.yml @@ -43,7 +43,7 @@ jobs: poetry add numpy@1.26.0 --lock poetry add pandas@2.1.2 --lock poetry add pint@0.13 --lock - poetry add xlrd@2.0.1 --extras optional_io_formats --optional --lock + poetry add xlrd@2.0.1 --optional --lock #------------------------------------ # load cached venv if cache exists From c7821de2d9e982477757e0427a95e804a2030e0c Mon Sep 17 00:00:00 2001 From: Fridolin Glatter Date: Thu, 7 Mar 2024 10:16:45 +0100 Subject: [PATCH 43/43] Migrate pandas-datareader to wbdata --- docs/conf.py | 2 +- poetry.lock | 384 +++++++++++++++++++++++++-------------- pyam/datareader.py | 44 +++-- pyproject.toml | 4 +- tests/test_datareader.py | 10 +- 5 files changed, 279 insertions(+), 165 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index d414b1b65..a0ea9a49c 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -327,10 +327,10 @@ "pint": ("https://pint.readthedocs.io/en/stable", None), "matplotlib": ("https://matplotlib.org/stable/", None), "plotly": ("https://plotly.com/python-api-reference/", None), - "pandas_datareader": ("https://pandas-datareader.readthedocs.io/en/stable", None), "unfccc_di_api": ("https://unfccc-di-api.readthedocs.io/en/stable", None), "nomenclature": ("https://nomenclature-iamc.readthedocs.io/en/stable", None), "ixmp4": ("https://docs.ece.iiasa.ac.at/projects/ixmp4/en/stable", None), + "wbdata": ("https://wbdata.readthedocs.io/en/stable/", None), } # Set up the plotting gallery with plotly scraper diff --git a/poetry.lock b/poetry.lock index 978d9e271..dffb17737 100644 --- a/poetry.lock +++ b/poetry.lock @@ -63,6 +63,17 @@ doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphin test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] trio = ["trio (>=0.23)"] +[[package]] +name = "appdirs" +version = "1.4.4" +description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +optional = true +python-versions = "*" +files = [ + {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"}, + {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"}, +] + [[package]] name = "appnope" version = "0.1.4" @@ -139,6 +150,17 @@ files = [ [package.extras] dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] +[[package]] +name = "backoff" +version = "2.2.1" +description = "Function decoration for backoff and retry" +optional = true +python-versions = ">=3.7,<4.0" +files = [ + {file = "backoff-2.2.1-py3-none-any.whl", hash = "sha256:63579f9a0628e06278f7e47b7d7d5b6ce20dc65c5e96a6f3ca99a6adca0396e8"}, + {file = "backoff-2.2.1.tar.gz", hash = "sha256:03f829f5bb1923180821643f8753b0502c3b682293992485b0eef2807afa5cba"}, +] + [[package]] name = "beautifulsoup4" version = "4.12.3" @@ -180,17 +202,17 @@ css = ["tinycss2 (>=1.1.0,<1.3)"] [[package]] name = "boto3" -version = "1.34.56" +version = "1.34.57" description = "The AWS SDK for Python" optional = true python-versions = ">= 3.8" files = [ - {file = "boto3-1.34.56-py3-none-any.whl", hash = "sha256:300888f0c1b6f32f27f85a9aa876f50f46514ec619647af7e4d20db74d339714"}, - {file = "boto3-1.34.56.tar.gz", hash = "sha256:b26928f9a21cf3649cea20a59061340f3294c6e7785ceb6e1a953eb8010dc3ba"}, + {file = "boto3-1.34.57-py3-none-any.whl", hash = "sha256:f8046e3e2d1186a49b49f7464c4811c265c86001f404dd1a96c4365c773a4245"}, + {file = "boto3-1.34.57.tar.gz", hash = "sha256:c26c31ceeeb2bc5d2bb96ba0fdc9a04d7b10e6e0b081c55b9cea9069a0be04dd"}, ] [package.dependencies] -botocore = ">=1.34.56,<1.35.0" +botocore = ">=1.34.57,<1.35.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.10.0,<0.11.0" @@ -199,13 +221,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.34.56" +version = "1.34.57" description = "Low-level, data-driven core of boto 3." optional = true python-versions = ">= 3.8" files = [ - {file = "botocore-1.34.56-py3-none-any.whl", hash = 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"fe71fd4202d4bac657a0489418daaf4530b5053a3ebf34abd835adcbaf3da686" +content-hash = "6db1475f34c21682a447c565bea446b2808c4555a00c49de5ef968071e5ce2ed" diff --git a/pyam/datareader.py b/pyam/datareader.py index ac7ded649..c59d46353 100644 --- a/pyam/datareader.py +++ b/pyam/datareader.py @@ -1,7 +1,9 @@ +import pandas as pd + from pyam import IamDataFrame try: - import pandas_datareader.wb as wb + import wbdata as wb HAS_DATAREADER = True except ImportError: # pragma: no cover @@ -9,17 +11,16 @@ HAS_DATAREADER = False -def read_worldbank(model="World Bank", scenario="WDI", **kwargs): +def read_worldbank(model="World Bank", scenario="WDI", **kwargs) -> IamDataFrame: """Read data from the World Bank Data Catalogue and return as IamDataFrame - This function is a simple wrapper for the class - :class:`pandas_datareader.wb.WorldBankReader` and the function - :func:`pandas_datareader.wb.download`. Import the module to retrieve/search + This function is a simple wrapper for the function + :func:`wbdata.get_dataframe`. Import the module to retrieve/search the list of indicators (and their id's), countries, etc. .. code-block:: python - from pandas_datareader import wb + import wbdata as wb Parameters ---------- @@ -28,18 +29,18 @@ def read_worldbank(model="World Bank", scenario="WDI", **kwargs): scenario : str, optional The `scenario` name to be used for the returned timeseries data. kwargs - passed to :func:`pandas_datareader.wb.download` + passed to :func:`wbdata.get_dataframe` Notes ----- - The function :func:`pandas_datareader.wb.download` takes an `indicator` - argument, which can be a string or list of strings. If the `indicator` - passed to :func:`read_worldbank` is a dictionary of a World Bank id mapped - to a string, the variables in the returned IamDataFrame will be renamed. + The function :func:`wbdata.get_dataframe` takes an `indicators` + argument, which is a dictionary where the keys are desired indicators and the values + are the desired column names. If the `indicators` passed to :func:`read_worldbank` + is a single indicator code string, we should instead use :func:`wbdata.get_series`. - The function :func:`pandas_datareader.wb.download` does not return a unit, + The function :func:`wbdata.get_dataframe` does not return a unit, but it can be collected for some indicators using the function - :func:`pandas_datareader.wb.get_indicators`. + :func:`wbdata.get_indicators`. In the current implementation, unit is defined as `n/a` for all data; this can be enhanced later (if there is interest from users). @@ -48,21 +49,24 @@ def read_worldbank(model="World Bank", scenario="WDI", **kwargs): :class:`IamDataFrame` """ if not HAS_DATAREADER: # pragma: no cover - raise ImportError("Required package `pandas-datareader` not found!") + raise ImportError("Required package `wbdata` not found!") - data = wb.download(**kwargs) + data: pd.DataFrame = wb.get_dataframe(**kwargs) + value = data.columns + data.reset_index(inplace=True) + data.rename(columns={"date": "year"}, inplace=True) df = IamDataFrame( - data.reset_index(), + data, model=model, scenario=scenario, - value=data.columns, + value=value, unit="n/a", region="country", ) # TODO use wb.get_indicators to retrieve corrent units (where available) - # if `indicator` is a mapping, use it for renaming - if "indicator" in kwargs and isinstance(kwargs["indicator"], dict): - df.rename(variable=kwargs["indicator"], inplace=True) + # if `indicators` is a mapping, use it for renaming + if "indicators" in kwargs and isinstance(kwargs["indicators"], dict): + df.rename(variable=kwargs["indicators"], inplace=True) return df diff --git a/pyproject.toml b/pyproject.toml index b2da98390..167e53187 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -60,7 +60,6 @@ numpy = ">=1.26.0" numpydoc = { version = ">=1.6.0", optional = true } openpyxl = ">=3.1.2" pandas = ">=2.1.2" -pandas-datareader = { version = ">=0.10.0", optional = true } pillow = { version = ">=10.2.0", optional = true } Pint = ">=0.13" plotly = { version = ">=5.19.0", optional = true } @@ -79,6 +78,7 @@ unfccc_di_api = { version = ">=3.0.1", optional = true } wquantiles = ">=0.6" xlrd = { version = ">=2.0.1", optional = true } XlsxWriter = ">=3.2.0" +wbdata = { version = ">=1.0.0", optional = true } [tool.poetry.extras] dev = ["ruff"] @@ -94,8 +94,8 @@ docs = [ ] optional_io_formats = [ "datapackage", - "pandas-datareader", "unfccc_di_api", + "wbdata", "xlrd", ] optional_plotting = ["plotly"] diff --git a/tests/test_datareader.py b/tests/test_datareader.py index 9b26f9557..b0033da2b 100644 --- a/tests/test_datareader.py +++ b/tests/test_datareader.py @@ -2,7 +2,7 @@ import pandas as pd import pytest -from pandas_datareader import wb +import wbdata as wb from requests.exceptions import ConnectionError, JSONDecodeError, ReadTimeout from pyam import IamDataFrame, read_worldbank @@ -32,7 +32,13 @@ @pytest.mark.skipif(WB_UNAVAILABLE, reason=WB_REASON) def test_worldbank(): try: - obs = read_worldbank(model="foo", indicator={"NY.GDP.PCAP.PP.KD": "GDP"}) + # Find the country codes via wbdata.get_countries(query="Canada") etc + obs = read_worldbank( + model="foo", + indicators={"NY.GDP.PCAP.PP.KD": "GDP"}, + country=["CAN", "MEX", "USA"], + date=("2003", "2005"), + ) exp = IamDataFrame(WB_DF) # test data with 5% relative tolerance to guard against minor data changes assert_iamframe_equal(obs, exp, rtol=5.0e-2)