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Rerun flux balance analysis (cobra) #62

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JoshLoecker opened this issue Oct 6, 2022 · 0 comments
Open

Rerun flux balance analysis (cobra) #62

JoshLoecker opened this issue Oct 6, 2022 · 0 comments
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priority:major state:open This is still being planned subsystem:jupyter-notebook Relates to the jupyter notebook type:bug This isn't working type:usability This is impacting end-user usability

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@JoshLoecker
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If a user provides their own model in Step 6 AND is using IMAT, flux balance analysis should be re-run to provide flux values.

There is an example of running cobra flux analysis in "Optional: Generate Memote Reports" of the jupyter notebook
@JoshLoecker JoshLoecker added type:bug This isn't working priority:major type:usability This is impacting end-user usability state:open This is still being planned subsystem:jupyter-notebook Relates to the jupyter notebook labels Oct 6, 2022
@JoshLoecker JoshLoecker moved this to Open in MADRID Oct 6, 2022
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priority:major state:open This is still being planned subsystem:jupyter-notebook Relates to the jupyter notebook type:bug This isn't working type:usability This is impacting end-user usability
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@JoshLoecker