From d80ac09a515401a55d2b184d45e6cc0e89231e51 Mon Sep 17 00:00:00 2001
From: jimboid <james.gebbie@stfc.ac.uk>
Date: Mon, 6 Jun 2016 15:22:26 +0100
Subject: [PATCH] namd plugin update for some missed file parameters

---
 Longbow/plugins/apps/namd.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Longbow/plugins/apps/namd.py b/Longbow/plugins/apps/namd.py
index ce580c1..2db0334 100644
--- a/Longbow/plugins/apps/namd.py
+++ b/Longbow/plugins/apps/namd.py
@@ -85,7 +85,7 @@ def file_parser(filename, path, files, substitutions=None):
         # Define keywords and create a dictionary for variable substitutions
         keywords = ['coordinates', 'extendedsystem', 'structure', 'parameters',
                     'paraTypeXplor', 'paraTypeCharmm', 'velocities',
-                    'binvelocities', 'bincoordinates']
+                    'binvelocities', 'bincoordinates', 'ambercoor', 'parmfile']
         variables = {}
 
         fil = None