ci.yml

name: LAPIS-SILO

on:
  push:


concurrency:
  group: ci-${{ github.ref }}
  cancel-in-progress: true

env:
  DOCKER_IMAGE_NAME: ghcr.io/GenSpectrum/LAPIS-SILO
  DOCKER_TEST_IMAGE_NAME: silo/unittests

jobs:
  formatting-check:
    name: Formatting Check
    runs-on: ubuntu-latest
    strategy:
      matrix:
        path:
          - check: 'src'
          - check: 'include'
            exclude: '(PerfEvent.hpp)'
    steps:
      - uses: actions/checkout@v4
      - name: Run clang-format style check
        uses: jidicula/clang-format-action@v4.11.0
        with:
          clang-format-version: '16'
          check-path: ${{ matrix.path['check'] }}
          exclude-regex: ${{ matrix.path['exclude'] }}

  linter:
    name: Build And Run linter
    runs-on: ubuntu-latest
    steps:
      -
        uses: actions/checkout@v4
      -
        name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v3
      -
        name: Build linter image
        uses: docker/build-push-action@v5
        with:
          context: .
          push: false
          target: linter
          tags: ${{ env.DOCKER_TEST_IMAGE_NAME }}
          cache-from: type=gha,scope=${{ github.ref_name }}-linter-image-cache
          cache-to: type=gha,mode=max,scope=${{ github.ref_name }}-linter-image-cache
          file: Dockerfile_linter

  dockerImage:
    name: Build And Run Unit Tests
    runs-on: ubuntu-latest
    permissions:
      packages: write
    steps:
      - uses: actions/checkout@v4
      - name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v3
      - name: Login to GitHub Container Registry
        uses: docker/login-action@v3
        with:
          registry: ghcr.io
          username: ${{ github.actor }}
          password: ${{ secrets.GITHUB_TOKEN }}
      -
        name: Build unit test image
        uses: docker/build-push-action@v5
        with:
          context: .
          push: false
          load: true
          target: builder
          tags: ${{ env.DOCKER_TEST_IMAGE_NAME }}
          cache-from: type=gha,scope=${{ github.ref_name }}-image-cache
          cache-to: type=gha,mode=max,scope=${{ github.ref_name }}-image-cache
      -
        name: Run tests
        uses: addnab/docker-run-action@v3
        with:
          image: ${{ env.DOCKER_TEST_IMAGE_NAME }}
          run: ./silo_test
      -
        name: Docker metadata
        id: dockerMetadata
        uses: docker/metadata-action@v5
        with:
          images: ${{ env.DOCKER_IMAGE_NAME }}
          tags: |
            type=ref,event=branch
            type=raw,value=latest,enable=${{ github.ref == format('refs/heads/{0}', 'main') }}
      -
        name: Build and push production image
        if: ${{ github.event_name == 'push' }}
        uses: docker/build-push-action@v5
        with:
          context: .
          push: true
          tags: ${{ steps.dockerMetadata.outputs.tags }}

  endToEndTests:
    name: Run End To End Tests
    runs-on: ubuntu-latest
    if: ${{ github.event_name == 'push' }}
    steps:
      -
        uses: actions/checkout@v4
      -
        name: Use Node.js ${{ matrix.node-version }}
        uses: actions/setup-node@v4
        with:
          node-version: 18.x
      -
        uses: actions/cache@v3
        with:
          path: ~/.npm
          key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
      -
        name: npm install
        run: cd endToEndTests && npm ci
      -
        name: Check Format
        run: cd endToEndTests && npm run check-format
      -
        name: Docker Metadata
        id: dockerMetadata
        uses: docker/metadata-action@v5
        with:
          images: ${{ env.DOCKER_IMAGE_NAME }}
          tags: type=ref,event=branch
      -
        name: Wait for Docker Image
        uses: lewagon/wait-on-check-action@v1.3.1
        with:
          ref: ${{ github.ref }}
          check-name: Build And Run Unit Tests
          repo-token: ${{ secrets.GITHUB_TOKEN }}
      - name: Start Docker Container and preprocess data
        run: docker compose -f docker-compose-for-tests-preprocessing.yml up
        env:
          SILO_IMAGE: ${{ steps.dockerMetadata.outputs.tags }}

      - name: Start Docker Container and run api
        run: docker compose -f docker-compose-for-tests-api.yml up -d --wait
        env:
          SILO_IMAGE: ${{ steps.dockerMetadata.outputs.tags }}
      -
        name: Run Tests
        run: cd endToEndTests && SILO_URL=localhost:8080 npm run test