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LOCUS KT388711 982 bp cRNA linear VRL 17-DEC-2015
DEFINITION Influenza A virus (A/goose/Taiwan/TNO20/2015(H5N8)) segment 7 cRNA
sequence.
ACCESSION KT388711
VERSION KT388711.1
KEYWORDS .
SOURCE Influenza A virus (A/goose/Taiwan/TNO20/2015(H5N8))
ORGANISM Influenza A virus (A/goose/Taiwan/TNO20/2015(H5N8))
Viruses; ssRNA viruses; ssRNA negative-strand viruses;
Orthomyxoviridae; Influenzavirus A.
REFERENCE 1 (bases 1 to 982)
AUTHORS Huang,P.Y., Lee,C.D., Yip,C.H., Cheung,C.L., Yu,G., Lam,T.T.,
Smith,D.K., Zhu,H. and Guan,Y.
TITLE Genetic characterization of highly pathogenic H5 influenza viruses
from poultry in Taiwan, 2015
JOURNAL Infect. Genet. Evol. 38, 96-100 (2015)
PUBMED 26690663
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 982)
AUTHORS Huang,P.Y., Lee,C.C., Yip,C.H., Cheung,C.L., Yu,G., Lam,T.Y.,
Smith,D.K., Zhu,H. and Guan,Y.
TITLE Direct Submission
JOURNAL Submitted (14-AUG-2015) Centre of Influenza Research, School of
Public Health, The University of Hong Kong, Laboratory Block, LKS
Faculty of Medicine Building, 21 Sassoon Road, Pokfulam, Hong Kong
SAR, China
COMMENT GenBank Accession Numbers KT388705-KT388712 represent sequences
from the 8 segments of Influenza A virus
(A/goose/Taiwan/TNO20/2015(H5N8)).
##Assembly-Data-START##
Assembly Method :: Lasergene v. 9.0
Sequencing Technology :: Sanger dideoxy sequencing; 454; Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..982
/organism="Influenza A virus
(A/goose/Taiwan/TNO20/2015(H5N8))"
/mol_type="viral cRNA"
/strain="A/goose/Taiwan/TNO20/2015"
/serotype="H5N8"
/isolation_source="oropharyngeal"
/host="goose"
/db_xref="taxon:1701790"
/segment="7"
/country="Taiwan"
/collection_date="17-Jan-2015"
/note="passage details: E1"
gene 1..982
/gene="M2"
CDS join(1..26,715..982)
/gene="M2"
/codon_start=1
/product="matrix protein 2"
/protein_id="ALB07774.1"
/translation="MSLLTEVETPTRTEWECRCSDSSDPLVVAANIIGILHLILWILD
RLFFKCIYRRLKYGLKIGPSTEGVPESMREEYRQEQQSAVDVDDGHFVNIELE"
gene 1..759
/gene="M1"
CDS 1..759
/gene="M1"
/codon_start=1
/product="matrix protein 1"
/protein_id="ALB07773.1"
/translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEALME
WLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDKAVKLYKK
LKREITFHGAKEVALSYSTGALASCMGLIYNRMGTVTTEVAFGLVCATCEQIADSQHR
SHRQMATITNPLIRHENRMVLASTTAKAMEQMAGSSEQASEAMEVANQARQMVQAMRT
IGTHPNSSAGLRDNLLENLQAYQNRMGVQMQRFK"
ORIGIN
1 atgagtcttc taaccgaggt cgaaacgtac gttctctcta tcatcccgtc aggccccctc
61 aaagccgaga tcgcgcagag acttgaagat gtctttgcag ggaaaaacac cgatctcgag
121 gctctcatgg agtggctaaa gacaagacca atcctgtcac ctctgactaa agggattttg
181 ggatttgtgt tcacgctcac cgtgcccagt gagcgaggac tgcagcgtag acgcttcgtc
241 cagaatgccc taaatggaaa tggggatcca aataatatgg ataaggcagt taagctatat
301 aagaagctga aaagagagat aacattccat ggggctaagg aggtcgcact tagctactca
361 accggtgcac ttgccagctg catgggtctc atatacaaca ggatgggaac ggtgactaca
421 gaagtggctt ttggcctagt gtgtgccact tgtgagcaga ttgcagattc acagcatcgg
481 tcccacagac agatggcaac catcaccaac ccattaatca gacatgagaa cagaatggtg
541 ctggccagca ctacagctaa ggccatggag cagatggcag gatcaagcga gcaggcatca
601 gaagccatgg aggttgctaa tcaggccagg cagatggtac aggcaatgag gacaattggg
661 actcatccta attctagtgc tggtctgaga gataatcttc ttgaaaattt gcaggcctac
721 cagaaccgaa tgggagtgca gatgcagcga ttcaagtgat cctcttgttg ttgccgcaaa
781 tatcattggg atcctgcact tgatattgtg gatccttgat cgtcttttct tcaaatgcat
841 ttatcgtcgc cttaaatacg gtttgaaaat agggccttct acggaagggg tacctgagtc
901 tatgagggaa gagtaccggc aggaacagca gagtgctgtg gatgttgacg atggtcattt
961 tgtcaacata gaattggagt aa
//