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Installation fails #221

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LuisaFJimenez opened this issue Oct 28, 2024 · 0 comments
Open

Installation fails #221

LuisaFJimenez opened this issue Oct 28, 2024 · 0 comments
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@LuisaFJimenez
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I want to install it to be able to explore my data

Outline the steps taken to attempt to reach this goal (paste code below):
Followed the steps in the README.
It fails at the
`# Install cytoinstaller
remotes::install_github("RGLab/cytoinstaller")

Install cytoverse packages

cytoinstaller::install_cyto(bioc_ver = "devel")`

It gives as feedback:
Error in cyto_pkg_github_url(pkg, owner, ...) :
Error in gh("GET /repos/:owner/:repo/releases/tags/:tag", owner = owner, :
GitHub API error (404): Not Found
✖ URL not found: https://api.github.com/repos/RGLab/COMPASS/releases/tags/bioc_3.20
ℹ Read more at https://docs.github.com/rest/releases/releases#get-a-release-by-tag-name

Information of my system:
SessionInfo()

R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: Linux Mint 19.1

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so; LAPACK version 3.7.1

locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=de_DE.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C

time zone: Europe/Berlin
tzcode source: system (glibc)

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] BiocManager_1.30.25

loaded via a namespace (and not attached):
[1] jsonlite_1.8.9 miniUI_0.1.1.1 compiler_4.4.1 gitcreds_0.1.2
[5] promises_1.3.0 Rcpp_1.0.13 callr_3.7.6 later_1.3.2
[9] fastmap_1.2.0 mime_0.12 R6_2.5.1 curl_5.2.3
[13] httr2_1.0.5 cytoinstaller_0.1.0 htmlwidgets_1.6.4 tibble_3.2.1
[17] desc_1.4.3 profvis_0.4.0 shiny_1.9.1 pillar_1.9.0
[21] rlang_1.1.4 utf8_1.2.4 cachem_1.1.0 httpuv_1.6.15
[25] fs_1.6.4 pkgload_1.4.0 memoise_2.0.1 cli_3.6.3
[29] magrittr_2.0.3 ps_1.8.0 gh_1.4.1 digest_0.6.37
[33] processx_3.8.4 rstudioapi_0.17.1 xtable_1.8-4 rappdirs_0.3.3
[37] remotes_2.5.0 devtools_2.4.5 lifecycle_1.0.4 vctrs_0.6.5
[41] glue_1.8.0 urlchecker_1.0.1 sessioninfo_1.2.2 pkgbuild_1.4.4
[45] fansi_1.0.6 purrr_1.0.2 pkgconfig_2.0.3 tools_4.4.1
[49] usethis_3.0.0 ellipsis_0.3.2 htmltools_0.5.8.1

Any idea? Because of this, the following are not working either:
devtools::install_github("DillonHammill/CytoExploreRData")
devtools::install_github("DillonHammill/CytoExploreR",build_vignettes = TRUE)
Thanks for your time,
Luisa

@LuisaFJimenez LuisaFJimenez added the Help Wanted Extra attention is needed label Oct 28, 2024
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