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Viral new File format? #280
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Thank you for sharing the file. I'll look into this. The filtered file is empty, so the issue should be in the summary.txt file. |
Yes, probably the columns changed. |
Sorry for the delayed reply. It seems the awk in centrifuge-download can find some rows in the assembly_summary.txt file. What was your running command? Thank you. |
No problems. I usually use this:
However, today I had to reproduce the error with ...
... since today also the bacteria part gives me some challenge. The error log is here: Maybe some helpful informations:
Let me knwo if you need further informations. |
Dear dev team,
it's possible, that the viral file changed again? Centrifuge is not downloading anything for viral.
Here the files:
assembly_summary.txt
assembly_summary_filtered.txt
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