From 05f1e56d8a84aeaaa61b03dc9d78382aa75c27ca Mon Sep 17 00:00:00 2001 From: Remco de Boer <29308176+redeboer@users.noreply.github.com> Date: Mon, 14 Oct 2024 13:33:53 +0200 Subject: [PATCH] DX: migrate to `uv` environment --- .constraints/.gitignore | 1 - .constraints/py3.10.txt | 196 -- .constraints/py3.11.txt | 195 -- .constraints/py3.12.txt | 194 -- .constraints/py3.9.txt | 196 -- .cspell.json | 2 - .editorconfig | 3 + .envrc | 12 +- .gitattributes | 1 - .github/workflows/cd.yml | 2 +- .github/workflows/ci.yml | 3 + .github/workflows/clean-caches.yml | 2 +- .github/workflows/release-drafter.yml | 2 +- .github/workflows/requirements.yml | 1 - .gitignore | 3 - .pre-commit-config.yaml | 23 +- .python-version | 1 + .readthedocs.yml | 5 +- .vscode/settings.json | 9 +- CONTRIBUTING.md | 25 +- README.md | 1 + docs/install.md | 65 +- environment.yml | 9 - pyproject.toml | 116 +- uv.lock | 3389 +++++++++++++++++++++++++ 25 files changed, 3451 insertions(+), 1005 deletions(-) delete mode 100644 .constraints/.gitignore delete mode 100644 .constraints/py3.10.txt delete mode 100644 .constraints/py3.11.txt delete mode 100644 .constraints/py3.12.txt delete mode 100644 .constraints/py3.9.txt delete mode 100644 .gitattributes create mode 100644 .python-version delete mode 100644 environment.yml create mode 100644 uv.lock diff --git a/.constraints/.gitignore b/.constraints/.gitignore deleted file mode 100644 index 36a07ad0..00000000 --- a/.constraints/.gitignore +++ /dev/null @@ -1 +0,0 @@ -!py3.*.txt diff --git a/.constraints/py3.10.txt b/.constraints/py3.10.txt deleted file mode 100644 index b68515f2..00000000 --- a/.constraints/py3.10.txt +++ /dev/null @@ -1,196 +0,0 @@ -# This file was autogenerated by uv via the following command: -# uv pip compile pyproject.toml -o .constraints/py3.10.txt --all-extras --no-annotate --python-version=3.10 --no-emit-package setuptools -accessible-pygments==0.0.5 -alabaster==1.0.0 -anyio==4.6.0 -argon2-cffi==23.1.0 -argon2-cffi-bindings==21.2.0 -arrow==1.3.0 -asttokens==2.4.1 -async-lru==2.0.4 -attrs==24.2.0 -babel==2.16.0 -beautifulsoup4==4.12.3 -bleach==6.1.0 -cachetools==5.5.0 -cattrs==24.1.2 -certifi==2024.8.30 -cffi==1.17.1 -cfgv==3.4.0 -chardet==5.2.0 -charset-normalizer==3.4.0 -click==8.1.7 -colorama==0.4.6 -comm==0.2.2 -coverage==7.6.2 -debugpy==1.8.7 -decorator==5.1.1 -defusedxml==0.7.1 -distlib==0.3.9 -docstring-to-markdown==0.15 -docutils==0.21.2 -exceptiongroup==1.2.2 -execnet==2.1.1 -executing==2.1.0 -fastjsonschema==2.20.0 -filelock==3.16.1 -fqdn==1.5.1 -gitdb==4.0.11 -gitpython==3.1.43 -gprof2dot==2024.6.6 -graphviz==0.20.3 -greenlet==3.1.1 -h11==0.14.0 -hepunits==2.3.5 -httpcore==1.0.6 -httpx==0.27.2 -identify==2.6.1 -idna==3.10 -imagesize==1.4.1 -importlib-metadata==8.5.0 -iniconfig==2.0.0 -ipykernel==6.29.5 -ipython==8.28.0 -ipywidgets==8.1.5 -isoduration==20.11.0 -jedi==0.19.1 -jinja2==3.1.4 -json5==0.9.25 -jsonpointer==3.0.0 -jsonschema==4.23.0 -jsonschema-specifications==2024.10.1 -jupyter-cache==1.0.0 -jupyter-client==8.6.3 -jupyter-core==5.7.2 -jupyter-events==0.10.0 -jupyter-lsp==2.2.5 -jupyter-server==2.14.2 -jupyter-server-mathjax==0.2.6 -jupyter-server-terminals==0.5.3 -jupyterlab==4.2.5 -jupyterlab-code-formatter==3.0.2 -jupyterlab-git==0.50.1 -jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.4.2 -jupyterlab-pygments==0.3.0 -jupyterlab-server==2.27.3 -jupyterlab-widgets==3.0.13 -latexcodec==3.0.0 -lsprotocol==2023.0.1 -markdown-it-py==3.0.0 -markupsafe==3.0.1 -matplotlib-inline==0.1.7 -mdit-py-plugins==0.4.2 -mdurl==0.1.2 -mistune==3.0.2 -mypy==1.11.2 -mypy-extensions==1.0.0 -myst-nb==1.1.2 -myst-parser==4.0.0 -nbclient==0.6.8 -nbconvert==7.16.4 -nbdime==4.0.2 -nbformat==5.10.4 -nbmake==1.5.4 -nest-asyncio==1.6.0 -nodeenv==1.9.1 -notebook-shim==0.2.4 -overrides==7.7.0 -packaging==24.1 -pandocfilters==1.5.1 -parso==0.8.4 -particle==0.25.2 -pexpect==4.9.0 -platformdirs==4.3.6 -pluggy==1.5.0 -pre-commit==4.0.1 -prometheus-client==0.21.0 -prompt-toolkit==3.0.48 -psutil==6.0.0 -ptyprocess==0.7.0 -pure-eval==0.2.3 -pybtex==0.24.0 -pybtex-docutils==1.0.3 -pycparser==2.22 -pydata-sphinx-theme==0.15.4 -pydot==1.4.2 -pygments==2.18.0 -pyparsing==3.1.4 -pyproject-api==1.8.0 -pytest==8.3.3 -pytest-cov==5.0.0 -pytest-profiling==1.7.0 -pytest-xdist==3.6.1 -python-constraint2==2.0.0b5 -python-dateutil==2.9.0.post0 -python-json-logger==2.0.7 -python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.2 -python-lsp-server==1.12.0 -pytoolconfig==1.3.1 -pyyaml==6.0.2 -pyzmq==26.2.0 -referencing==0.35.1 -requests==2.32.3 -rfc3339-validator==0.1.4 -rfc3986-validator==0.1.1 -rope==1.13.0 -rpds-py==0.20.0 -ruff==0.6.9 -send2trash==1.8.3 -six==1.16.0 -smmap==5.0.1 -sniffio==1.3.1 -snowballstemmer==2.2.0 -soupsieve==2.6 -sphinx==8.1.0 -sphinx-api-relink==0.0.10 -sphinx-autobuild==2024.10.3 -sphinx-book-theme==1.1.3 -sphinx-codeautolink==0.15.2 -sphinx-comments==0.0.3 -sphinx-copybutton==0.5.2 -sphinx-design==0.6.1 -sphinx-hep-pdgref==0.2.0 -sphinx-pybtex-etal-style==0.0.2 -sphinx-thebe==0.3.1 -sphinx-togglebutton==0.3.2 -sphinxcontrib-applehelp==2.0.0 -sphinxcontrib-bibtex==2.6.3 -sphinxcontrib-devhelp==2.0.0 -sphinxcontrib-htmlhelp==2.1.0 -sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==2.0.0 -sphinxcontrib-serializinghtml==2.0.0 -sqlalchemy==2.0.35 -stack-data==0.6.3 -starlette==0.39.2 -tabulate==0.9.0 -terminado==0.18.1 -tinycss2==1.3.0 -tomli==2.0.2 -tornado==6.4.1 -tox==4.21.2 -tqdm==4.66.5 -traitlets==5.14.3 -types-python-dateutil==2.9.0.20241003 -types-pyyaml==6.0.12.20240917 -types-setuptools==75.1.0.20240917 -typing-extensions==4.12.2 -ujson==5.10.0 -uri-template==1.3.0 -urllib3==2.2.3 -uvicorn==0.31.1 -virtualenv==20.26.6 -watchfiles==0.24.0 -wcwidth==0.2.13 -webcolors==24.8.0 -webencodings==0.5.1 -websocket-client==1.8.0 -websockets==13.1 -wheel==0.44.0 -widgetsnbextension==4.0.13 -zipp==3.20.2 - -# The following packages were excluded from the output: -# setuptools diff --git a/.constraints/py3.11.txt b/.constraints/py3.11.txt deleted file mode 100644 index b560dc54..00000000 --- a/.constraints/py3.11.txt +++ /dev/null @@ -1,195 +0,0 @@ -# This file was autogenerated by uv via the following command: -# uv pip compile pyproject.toml -o .constraints/py3.11.txt --all-extras --no-annotate --python-version=3.11 --no-emit-package setuptools -accessible-pygments==0.0.5 -alabaster==1.0.0 -anyio==4.6.0 -argon2-cffi==23.1.0 -argon2-cffi-bindings==21.2.0 -arrow==1.3.0 -asttokens==2.4.1 -async-lru==2.0.4 -attrs==24.2.0 -babel==2.16.0 -beautifulsoup4==4.12.3 -bleach==6.1.0 -cachetools==5.5.0 -cattrs==24.1.2 -certifi==2024.8.30 -cffi==1.17.1 -cfgv==3.4.0 -chardet==5.2.0 -charset-normalizer==3.4.0 -click==8.1.7 -colorama==0.4.6 -comm==0.2.2 -coverage==7.6.2 -debugpy==1.8.7 -decorator==5.1.1 -defusedxml==0.7.1 -distlib==0.3.9 -docstring-to-markdown==0.15 -docutils==0.21.2 -execnet==2.1.1 -executing==2.1.0 -fastjsonschema==2.20.0 -filelock==3.16.1 -fqdn==1.5.1 -gitdb==4.0.11 -gitpython==3.1.43 -gprof2dot==2024.6.6 -graphviz==0.20.3 -greenlet==3.1.1 -h11==0.14.0 -hepunits==2.3.5 -httpcore==1.0.6 -httpx==0.27.2 -identify==2.6.1 -idna==3.10 -imagesize==1.4.1 -importlib-metadata==8.5.0 -iniconfig==2.0.0 -ipykernel==6.29.5 -ipython==8.28.0 -ipywidgets==8.1.5 -isoduration==20.11.0 -jedi==0.19.1 -jinja2==3.1.4 -json5==0.9.25 -jsonpointer==3.0.0 -jsonschema==4.23.0 -jsonschema-specifications==2024.10.1 -jupyter-cache==1.0.0 -jupyter-client==8.6.3 -jupyter-core==5.7.2 -jupyter-events==0.10.0 -jupyter-lsp==2.2.5 -jupyter-server==2.14.2 -jupyter-server-mathjax==0.2.6 -jupyter-server-terminals==0.5.3 -jupyterlab==4.2.5 -jupyterlab-code-formatter==3.0.2 -jupyterlab-git==0.50.1 -jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.4.2 -jupyterlab-pygments==0.3.0 -jupyterlab-server==2.27.3 -jupyterlab-widgets==3.0.13 -latexcodec==3.0.0 -lsprotocol==2023.0.1 -markdown-it-py==3.0.0 -markupsafe==3.0.1 -matplotlib-inline==0.1.7 -mdit-py-plugins==0.4.2 -mdurl==0.1.2 -mistune==3.0.2 -mypy==1.11.2 -mypy-extensions==1.0.0 -myst-nb==1.1.2 -myst-parser==4.0.0 -nbclient==0.6.8 -nbconvert==7.16.4 -nbdime==4.0.2 -nbformat==5.10.4 -nbmake==1.5.4 -nest-asyncio==1.6.0 -nodeenv==1.9.1 -notebook-shim==0.2.4 -overrides==7.7.0 -packaging==24.1 -pandocfilters==1.5.1 -parso==0.8.4 -particle==0.25.2 -pexpect==4.9.0 -platformdirs==4.3.6 -pluggy==1.5.0 -pre-commit==4.0.1 -prometheus-client==0.21.0 -prompt-toolkit==3.0.48 -psutil==6.0.0 -ptyprocess==0.7.0 -pure-eval==0.2.3 -pybtex==0.24.0 -pybtex-docutils==1.0.3 -pycparser==2.22 -pydata-sphinx-theme==0.15.4 -pydot==1.4.2 -pygments==2.18.0 -pyparsing==3.1.4 -pyproject-api==1.8.0 -pytest==8.3.3 -pytest-cov==5.0.0 -pytest-profiling==1.7.0 -pytest-xdist==3.6.1 -python-constraint2==2.0.0b5 -python-dateutil==2.9.0.post0 -python-json-logger==2.0.7 -python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.2 -python-lsp-server==1.12.0 -pytoolconfig==1.3.1 -pyyaml==6.0.2 -pyzmq==26.2.0 -referencing==0.35.1 -requests==2.32.3 -rfc3339-validator==0.1.4 -rfc3986-validator==0.1.1 -rope==1.13.0 -rpds-py==0.20.0 -ruff==0.6.9 -send2trash==1.8.3 -six==1.16.0 -smmap==5.0.1 -sniffio==1.3.1 -snowballstemmer==2.2.0 -soupsieve==2.6 -sphinx==8.1.0 -sphinx-api-relink==0.0.10 -sphinx-autobuild==2024.10.3 -sphinx-book-theme==1.1.3 -sphinx-codeautolink==0.15.2 -sphinx-comments==0.0.3 -sphinx-copybutton==0.5.2 -sphinx-design==0.6.1 -sphinx-hep-pdgref==0.2.0 -sphinx-pybtex-etal-style==0.0.2 -sphinx-thebe==0.3.1 -sphinx-togglebutton==0.3.2 -sphinxcontrib-applehelp==2.0.0 -sphinxcontrib-bibtex==2.6.3 -sphinxcontrib-devhelp==2.0.0 -sphinxcontrib-htmlhelp==2.1.0 -sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==2.0.0 -sphinxcontrib-serializinghtml==2.0.0 -sqlalchemy==2.0.35 -stack-data==0.6.3 -starlette==0.39.2 -tabulate==0.9.0 -terminado==0.18.1 -tinycss2==1.3.0 -tomli==2.0.2 -tornado==6.4.1 -tox==4.21.2 -tqdm==4.66.5 -traitlets==5.14.3 -types-python-dateutil==2.9.0.20241003 -types-pyyaml==6.0.12.20240917 -types-setuptools==75.1.0.20240917 -typing-extensions==4.12.2 -ujson==5.10.0 -uri-template==1.3.0 -urllib3==2.2.3 -uvicorn==0.31.1 -virtualenv==20.26.6 -watchfiles==0.24.0 -wcwidth==0.2.13 -webcolors==24.8.0 -webencodings==0.5.1 -websocket-client==1.8.0 -websockets==13.1 -wheel==0.44.0 -widgetsnbextension==4.0.13 -zipp==3.20.2 - -# The following packages were excluded from the output: -# setuptools diff --git a/.constraints/py3.12.txt b/.constraints/py3.12.txt deleted file mode 100644 index 6d29b23a..00000000 --- a/.constraints/py3.12.txt +++ /dev/null @@ -1,194 +0,0 @@ -# This file was autogenerated by uv via the following command: -# uv pip compile pyproject.toml -o .constraints/py3.12.txt --all-extras --no-annotate --python-version=3.12 --no-emit-package setuptools -accessible-pygments==0.0.5 -alabaster==1.0.0 -anyio==4.6.0 -argon2-cffi==23.1.0 -argon2-cffi-bindings==21.2.0 -arrow==1.3.0 -asttokens==2.4.1 -async-lru==2.0.4 -attrs==24.2.0 -babel==2.16.0 -beautifulsoup4==4.12.3 -bleach==6.1.0 -cachetools==5.5.0 -cattrs==24.1.2 -certifi==2024.8.30 -cffi==1.17.1 -cfgv==3.4.0 -chardet==5.2.0 -charset-normalizer==3.4.0 -click==8.1.7 -colorama==0.4.6 -comm==0.2.2 -coverage==7.6.2 -debugpy==1.8.7 -decorator==5.1.1 -defusedxml==0.7.1 -distlib==0.3.9 -docstring-to-markdown==0.15 -docutils==0.21.2 -execnet==2.1.1 -executing==2.1.0 -fastjsonschema==2.20.0 -filelock==3.16.1 -fqdn==1.5.1 -gitdb==4.0.11 -gitpython==3.1.43 -gprof2dot==2024.6.6 -graphviz==0.20.3 -greenlet==3.1.1 -h11==0.14.0 -hepunits==2.3.5 -httpcore==1.0.6 -httpx==0.27.2 -identify==2.6.1 -idna==3.10 -imagesize==1.4.1 -importlib-metadata==8.5.0 -iniconfig==2.0.0 -ipykernel==6.29.5 -ipython==8.28.0 -ipywidgets==8.1.5 -isoduration==20.11.0 -jedi==0.19.1 -jinja2==3.1.4 -json5==0.9.25 -jsonpointer==3.0.0 -jsonschema==4.23.0 -jsonschema-specifications==2024.10.1 -jupyter-cache==1.0.0 -jupyter-client==8.6.3 -jupyter-core==5.7.2 -jupyter-events==0.10.0 -jupyter-lsp==2.2.5 -jupyter-server==2.14.2 -jupyter-server-mathjax==0.2.6 -jupyter-server-terminals==0.5.3 -jupyterlab==4.2.5 -jupyterlab-code-formatter==3.0.2 -jupyterlab-git==0.50.1 -jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.4.2 -jupyterlab-pygments==0.3.0 -jupyterlab-server==2.27.3 -jupyterlab-widgets==3.0.13 -latexcodec==3.0.0 -lsprotocol==2023.0.1 -markdown-it-py==3.0.0 -markupsafe==3.0.1 -matplotlib-inline==0.1.7 -mdit-py-plugins==0.4.2 -mdurl==0.1.2 -mistune==3.0.2 -mypy==1.11.2 -mypy-extensions==1.0.0 -myst-nb==1.1.2 -myst-parser==4.0.0 -nbclient==0.6.8 -nbconvert==7.16.4 -nbdime==4.0.2 -nbformat==5.10.4 -nbmake==1.5.4 -nest-asyncio==1.6.0 -nodeenv==1.9.1 -notebook-shim==0.2.4 -overrides==7.7.0 -packaging==24.1 -pandocfilters==1.5.1 -parso==0.8.4 -particle==0.25.2 -pexpect==4.9.0 -platformdirs==4.3.6 -pluggy==1.5.0 -pre-commit==4.0.1 -prometheus-client==0.21.0 -prompt-toolkit==3.0.48 -psutil==6.0.0 -ptyprocess==0.7.0 -pure-eval==0.2.3 -pybtex==0.24.0 -pybtex-docutils==1.0.3 -pycparser==2.22 -pydata-sphinx-theme==0.15.4 -pydot==1.4.2 -pygments==2.18.0 -pyparsing==3.1.4 -pyproject-api==1.8.0 -pytest==8.3.3 -pytest-cov==5.0.0 -pytest-profiling==1.7.0 -pytest-xdist==3.6.1 -python-constraint2==2.0.0b5 -python-dateutil==2.9.0.post0 -python-json-logger==2.0.7 -python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.2 -python-lsp-server==1.12.0 -pytoolconfig==1.3.1 -pyyaml==6.0.2 -pyzmq==26.2.0 -referencing==0.35.1 -requests==2.32.3 -rfc3339-validator==0.1.4 -rfc3986-validator==0.1.1 -rope==1.13.0 -rpds-py==0.20.0 -ruff==0.6.9 -send2trash==1.8.3 -six==1.16.0 -smmap==5.0.1 -sniffio==1.3.1 -snowballstemmer==2.2.0 -soupsieve==2.6 -sphinx==8.1.0 -sphinx-api-relink==0.0.10 -sphinx-autobuild==2024.10.3 -sphinx-book-theme==1.1.3 -sphinx-codeautolink==0.15.2 -sphinx-comments==0.0.3 -sphinx-copybutton==0.5.2 -sphinx-design==0.6.1 -sphinx-hep-pdgref==0.2.0 -sphinx-pybtex-etal-style==0.0.2 -sphinx-thebe==0.3.1 -sphinx-togglebutton==0.3.2 -sphinxcontrib-applehelp==2.0.0 -sphinxcontrib-bibtex==2.6.3 -sphinxcontrib-devhelp==2.0.0 -sphinxcontrib-htmlhelp==2.1.0 -sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==2.0.0 -sphinxcontrib-serializinghtml==2.0.0 -sqlalchemy==2.0.35 -stack-data==0.6.3 -starlette==0.39.2 -tabulate==0.9.0 -terminado==0.18.1 -tinycss2==1.3.0 -tornado==6.4.1 -tox==4.21.2 -tqdm==4.66.5 -traitlets==5.14.3 -types-python-dateutil==2.9.0.20241003 -types-pyyaml==6.0.12.20240917 -types-setuptools==75.1.0.20240917 -typing-extensions==4.12.2 -ujson==5.10.0 -uri-template==1.3.0 -urllib3==2.2.3 -uvicorn==0.31.1 -virtualenv==20.26.6 -watchfiles==0.24.0 -wcwidth==0.2.13 -webcolors==24.8.0 -webencodings==0.5.1 -websocket-client==1.8.0 -websockets==13.1 -wheel==0.44.0 -widgetsnbextension==4.0.13 -zipp==3.20.2 - -# The following packages were excluded from the output: -# setuptools diff --git a/.constraints/py3.9.txt b/.constraints/py3.9.txt deleted file mode 100644 index 96978a0a..00000000 --- a/.constraints/py3.9.txt +++ /dev/null @@ -1,196 +0,0 @@ -# This file was autogenerated by uv via the following command: -# uv pip compile pyproject.toml -o .constraints/py3.9.txt --all-extras --no-annotate --python-version=3.9 --no-emit-package setuptools -accessible-pygments==0.0.5 -alabaster==0.7.16 -anyio==4.6.0 -argon2-cffi==23.1.0 -argon2-cffi-bindings==21.2.0 -arrow==1.3.0 -asttokens==2.4.1 -async-lru==2.0.4 -attrs==24.2.0 -babel==2.16.0 -beautifulsoup4==4.12.3 -bleach==6.1.0 -cachetools==5.5.0 -cattrs==24.1.2 -certifi==2024.8.30 -cffi==1.17.1 -cfgv==3.4.0 -chardet==5.2.0 -charset-normalizer==3.4.0 -click==8.1.7 -colorama==0.4.6 -comm==0.2.2 -coverage==7.6.2 -debugpy==1.8.7 -decorator==5.1.1 -defusedxml==0.7.1 -distlib==0.3.9 -docstring-to-markdown==0.15 -docutils==0.21.2 -exceptiongroup==1.2.2 -execnet==2.1.1 -executing==2.1.0 -fastjsonschema==2.20.0 -filelock==3.16.1 -fqdn==1.5.1 -gitdb==4.0.11 -gitpython==3.1.43 -gprof2dot==2024.6.6 -graphviz==0.20.3 -greenlet==3.1.1 -h11==0.14.0 -hepunits==2.3.5 -httpcore==1.0.6 -httpx==0.27.2 -identify==2.6.1 -idna==3.10 -imagesize==1.4.1 -importlib-metadata==8.5.0 -iniconfig==2.0.0 -ipykernel==6.29.5 -ipython==8.18.1 -ipywidgets==8.1.5 -isoduration==20.11.0 -jedi==0.19.1 -jinja2==3.1.4 -json5==0.9.25 -jsonpointer==3.0.0 -jsonschema==4.23.0 -jsonschema-specifications==2024.10.1 -jupyter-cache==1.0.0 -jupyter-client==8.6.3 -jupyter-core==5.7.2 -jupyter-events==0.10.0 -jupyter-lsp==2.2.5 -jupyter-server==2.14.2 -jupyter-server-mathjax==0.2.6 -jupyter-server-terminals==0.5.3 -jupyterlab==4.2.5 -jupyterlab-code-formatter==3.0.2 -jupyterlab-git==0.50.1 -jupyterlab-lsp==5.1.0 -jupyterlab-myst==2.4.2 -jupyterlab-pygments==0.3.0 -jupyterlab-server==2.27.3 -jupyterlab-widgets==3.0.13 -latexcodec==3.0.0 -lsprotocol==2023.0.1 -markdown-it-py==3.0.0 -markupsafe==3.0.1 -matplotlib-inline==0.1.7 -mdit-py-plugins==0.4.2 -mdurl==0.1.2 -mistune==3.0.2 -mypy==1.11.2 -mypy-extensions==1.0.0 -myst-nb==1.1.2 -myst-parser==3.0.1 -nbclient==0.6.8 -nbconvert==7.16.4 -nbdime==4.0.2 -nbformat==5.10.4 -nbmake==1.5.4 -nest-asyncio==1.6.0 -nodeenv==1.9.1 -notebook-shim==0.2.4 -overrides==7.7.0 -packaging==24.1 -pandocfilters==1.5.1 -parso==0.8.4 -particle==0.25.2 -pexpect==4.9.0 -platformdirs==4.3.6 -pluggy==1.5.0 -pre-commit==4.0.1 -prometheus-client==0.21.0 -prompt-toolkit==3.0.48 -psutil==6.0.0 -ptyprocess==0.7.0 -pure-eval==0.2.3 -pybtex==0.24.0 -pybtex-docutils==1.0.3 -pycparser==2.22 -pydata-sphinx-theme==0.15.4 -pydot==1.4.2 -pygments==2.18.0 -pyparsing==3.1.4 -pyproject-api==1.8.0 -pytest==8.3.3 -pytest-cov==5.0.0 -pytest-profiling==1.7.0 -pytest-xdist==3.6.1 -python-constraint2==2.0.0b5 -python-dateutil==2.9.0.post0 -python-json-logger==2.0.7 -python-lsp-jsonrpc==1.1.2 -python-lsp-ruff==2.2.2 -python-lsp-server==1.12.0 -pytoolconfig==1.3.1 -pyyaml==6.0.2 -pyzmq==26.2.0 -referencing==0.35.1 -requests==2.32.3 -rfc3339-validator==0.1.4 -rfc3986-validator==0.1.1 -rope==1.13.0 -rpds-py==0.20.0 -ruff==0.6.9 -send2trash==1.8.3 -six==1.16.0 -smmap==5.0.1 -sniffio==1.3.1 -snowballstemmer==2.2.0 -soupsieve==2.6 -sphinx==7.4.7 -sphinx-api-relink==0.0.10 -sphinx-autobuild==2024.10.3 -sphinx-book-theme==1.1.3 -sphinx-codeautolink==0.15.2 -sphinx-comments==0.0.3 -sphinx-copybutton==0.5.2 -sphinx-design==0.6.1 -sphinx-hep-pdgref==0.2.0 -sphinx-pybtex-etal-style==0.0.2 -sphinx-thebe==0.3.1 -sphinx-togglebutton==0.3.2 -sphinxcontrib-applehelp==2.0.0 -sphinxcontrib-bibtex==2.6.3 -sphinxcontrib-devhelp==2.0.0 -sphinxcontrib-htmlhelp==2.1.0 -sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==2.0.0 -sphinxcontrib-serializinghtml==2.0.0 -sqlalchemy==2.0.35 -stack-data==0.6.3 -starlette==0.39.2 -tabulate==0.9.0 -terminado==0.18.1 -tinycss2==1.3.0 -tomli==2.0.2 -tornado==6.4.1 -tox==4.21.2 -tqdm==4.66.5 -traitlets==5.14.3 -types-python-dateutil==2.9.0.20241003 -types-pyyaml==6.0.12.20240917 -types-setuptools==75.1.0.20240917 -typing-extensions==4.12.2 -ujson==5.10.0 -uri-template==1.3.0 -urllib3==2.2.3 -uvicorn==0.31.1 -virtualenv==20.26.6 -watchfiles==0.24.0 -wcwidth==0.2.13 -webcolors==24.8.0 -webencodings==0.5.1 -websocket-client==1.8.0 -websockets==13.1 -wheel==0.44.0 -widgetsnbextension==4.0.13 -zipp==3.20.2 - -# The following packages were excluded from the output: -# setuptools diff --git a/.cspell.json b/.cspell.json index 69b5a520..a0fad7f2 100644 --- a/.cspell.json +++ b/.cspell.json @@ -24,10 +24,8 @@ "**/.cspell.json", "*.ico", "*particle*.*ml", - ".constraints/*.txt", ".editorconfig", ".envrc", - ".gitattributes", ".gitignore", ".pre-commit-config.yaml", ".prettierignore", diff --git a/.editorconfig b/.editorconfig index 88befe69..9e92189a 100644 --- a/.editorconfig +++ b/.editorconfig @@ -18,3 +18,6 @@ indent_size = unset [setup.cfg] indent_size = 4 + +[uv.lock] +indent_size = 4 diff --git a/.envrc b/.envrc index e1d415a5..41fd2cab 100644 --- a/.envrc +++ b/.envrc @@ -1,10 +1,2 @@ -if [ -e .venv ]; then - source .venv/bin/activate -elif [ -e venv ]; then - source venv/bin/activate -elif [ -e .pixi ]; then - watch_file pixi.lock - eval "$(pixi shell-hook)" -else - layout anaconda -fi +uv sync --all-extras --quiet +source .venv/bin/activate diff --git a/.gitattributes b/.gitattributes deleted file mode 100644 index 18f6c7e9..00000000 --- a/.gitattributes +++ /dev/null @@ -1 +0,0 @@ -pixi.lock linguist-language=YAML linguist-generated=true diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml index 54ae3bc8..2f66c9ab 100644 --- a/.github/workflows/cd.yml +++ b/.github/workflows/cd.yml @@ -22,7 +22,7 @@ jobs: - package-name permissions: id-token: write - runs-on: ubuntu-22.04 + runs-on: ubuntu-24.04 steps: - uses: ComPWA/actions/build-pypi-distribution@v1 - uses: pypa/gh-action-pypi-publish@release/v1 diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index baaf7849..eb99b037 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -34,6 +34,7 @@ jobs: id-token: write with: apt-packages: graphviz + python-version: "3.9" specific-pip-packages: ${{ inputs.specific-pip-packages }} pytest: uses: ComPWA/actions/.github/workflows/pytest.yml@v1 @@ -47,3 +48,5 @@ jobs: secrets: token: ${{ secrets.PAT }} uses: ComPWA/actions/.github/workflows/pre-commit.yml@v1 + with: + python-version: "3.9" diff --git a/.github/workflows/clean-caches.yml b/.github/workflows/clean-caches.yml index a66c407b..939e1361 100644 --- a/.github/workflows/clean-caches.yml +++ b/.github/workflows/clean-caches.yml @@ -14,7 +14,7 @@ on: jobs: cleanup: name: Remove caches - runs-on: ubuntu-22.04 + runs-on: ubuntu-24.04 steps: - uses: ComPWA/actions/clean-caches@v1 with: diff --git a/.github/workflows/release-drafter.yml b/.github/workflows/release-drafter.yml index 52340935..32c6579c 100644 --- a/.github/workflows/release-drafter.yml +++ b/.github/workflows/release-drafter.yml @@ -9,7 +9,7 @@ on: jobs: update_release_draft: - runs-on: ubuntu-22.04 + runs-on: ubuntu-24.04 steps: - uses: release-drafter/release-drafter@v6 env: diff --git a/.github/workflows/requirements.yml b/.github/workflows/requirements.yml index 6716e974..e1639791 100644 --- a/.github/workflows/requirements.yml +++ b/.github/workflows/requirements.yml @@ -11,7 +11,6 @@ on: - main - epic/* paths: - - .constraints/py3.*.txt - .pre-commit-config.yaml schedule: - cron: "0 3 7 */1 *" diff --git a/.gitignore b/.gitignore index cd08a7f8..6f8b0e62 100644 --- a/.gitignore +++ b/.gitignore @@ -23,7 +23,6 @@ version.py *.pyc *.swp *.tmp -*condaenv.* .coverage .coverage.* .ipynb_checkpoints/ @@ -40,7 +39,6 @@ TAGS # Virtual environments *venv/ -.pixi/ .tox/ pyvenv*/ @@ -57,5 +55,4 @@ pyvenv*/ !.vscode/*.json !.zenodo.json !codecov.yml -!environment.yml !pyrightconfig.json diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 8ac11a11..279878d0 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,10 +1,11 @@ ci: - autoupdate_commit_msg: "MAINT: update pip constraints and pre-commit" + autoupdate_commit_msg: "MAINT: update lock files" autoupdate_schedule: quarterly # already done by requirements-cron.yml skip: - check-jsonschema - mypy - pyright + - uv-lock repos: - repo: meta @@ -13,10 +14,11 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.4.0 + rev: 0.5.0rc0 hooks: - id: check-dev-files args: + - --dev-python-version=3.9 - --doc-apt-packages=graphviz - --no-prettierrc - --pin-requirements=monthly @@ -60,7 +62,7 @@ repos: metadata.vscode - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.6.4 + rev: v0.6.9 hooks: - id: ruff args: [--fix] @@ -69,7 +71,7 @@ repos: types_or: [python, pyi, jupyter] - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: check-ast - id: check-case-conflict @@ -109,7 +111,7 @@ repos: - --in-place - repo: https://github.com/python-jsonschema/check-jsonschema - rev: 0.29.2 + rev: 0.29.4 hooks: - id: check-jsonschema name: Check CITATION.cff @@ -122,7 +124,7 @@ repos: pass_filenames: false - repo: https://github.com/streetsidesoftware/cspell-cli - rev: v8.13.3 + rev: v8.15.1 hooks: - id: cspell @@ -147,7 +149,12 @@ repos: types: - python - - repo: https://github.com/ComPWA/mirrors-pyright - rev: v1.1.379 + - repo: https://github.com/ComPWA/pyright-pre-commit + rev: v1.1.384 hooks: - id: pyright + + - repo: https://github.com/astral-sh/uv-pre-commit + rev: 0.4.20 + hooks: + - id: uv-lock diff --git a/.python-version b/.python-version new file mode 100644 index 00000000..bd28b9c5 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.9 diff --git a/.readthedocs.yml b/.readthedocs.yml index 1fa04aaf..82d90701 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -1,7 +1,7 @@ version: 2 build: - os: ubuntu-22.04 + os: ubuntu-24.04 tools: python: "3.9" apt_packages: @@ -9,8 +9,7 @@ build: jobs: post_install: - python -m pip install 'uv>=0.2.0' - - python -m uv pip install -c .constraints/py3.9.txt -e .[doc] - + - python -m uv sync --extra=doc formats: - htmlzip diff --git a/.vscode/settings.json b/.vscode/settings.json index f63375fb..a91a3d20 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -26,17 +26,13 @@ "[yaml]": { "editor.defaultFormatter": "esbenp.prettier-vscode" }, + "cSpell.enabled": true, "coverage-gutters.coverageFileNames": ["coverage.xml"], "coverage-gutters.coverageReportFileName": "**/htmlcov/index.html", "coverage-gutters.showGutterCoverage": false, "coverage-gutters.showLineCoverage": true, - "cSpell.enabled": true, "diffEditor.experimental.showMoves": true, "editor.formatOnSave": true, - "files.associations": { - "**/.constraints/py*.txt": "pip-requirements", - "**/pixi.lock": "yaml" - }, "files.watcherExclude": { "**/*_cache/**": true, "**/.eggs/**": true, @@ -67,7 +63,6 @@ "notebook.gotoSymbols.showAllSymbols": true, "python.analysis.autoImportCompletions": false, "python.analysis.inlayHints.pytestParameters": true, - "python.analysis.typeCheckingMode": "strict", "python.terminal.activateEnvironment": false, "python.testing.pytestArgs": ["--color=no", "--no-cov"], "python.testing.pytestEnabled": true, @@ -79,7 +74,7 @@ "ruff.organizeImports": true, "search.exclude": { "**/tests/**/__init__.py": true, - ".constraints/*.txt": true + "**/uv.lock": true }, "telemetry.telemetryLevel": "off", "yaml.schemas": { diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 4d2abc42..2f5ab117 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,5 +1,26 @@ # How to contribute? -[![Open in Visual Studio Code](https://img.shields.io/badge/vscode-open-blue?logo=visualstudiocode)](https://open.vscode.dev/ComPWA/qrules) +[![Open in Visual Studio Code](https://img.shields.io/badge/vscode-open-blue?logo=visualstudiocode)](https://github.dev/ComPWA/qrules) -This package is part of the [ComPWA Organization](https://github.com/ComPWA). For more information about how to contribute to the packages, go to [compwa.github.io/develop](https://compwa.github.io/develop)! +> [!TIP] +> This package is part of the [ComPWA Organization](https://github.com/ComPWA). For more information about how to contribute to the packages, go to **[compwa.github.io/develop](https://compwa.github.io/develop)**! + +To contribute to the project, you need to install the package in a virtual environment. This can be done best with [`uv`](https://docs.astral.sh/uv) (see installation instructions [here](https://docs.astral.sh/uv/getting-started/installation)). For this, you first need to get the source code with [Git](https://git-scm.com): + +```shell +git clone https://github.com/ComPWA/qrules +cd qrules +``` + +Now it's simply a matter of creating and activating the [virtual environment](https://docs.astral.sh/uv/pip/environments) with [`uv sync`](https://docs.astral.sh/uv/reference/cli/#uv-sync). The dependencies for the project are 'pinned' in each commit through the [`uv.lock` file](https://docs.astral.sh/uv/concepts/projects/#project-lockfile). + +```shell +uv sync +source .venv/bin/activate +``` + +Formatting and linting checks are automatically performed when committing changes. This is done with [pre-commit](https://pre-commit.com). To install the hooks in your local repository, run [`pre-commit install`](https://pre-commit.com/#3-install-the-git-hook-scripts) **once**: + +```shell +pre-commit install --install-hooks +``` diff --git a/README.md b/README.md index 29bccede..cae9caac 100644 --- a/README.md +++ b/README.md @@ -20,6 +20,7 @@ [![Spelling checked](https://img.shields.io/badge/cspell-checked-brightgreen.svg)](https://github.com/streetsidesoftware/cspell/tree/master/packages/cspell) [![code style: prettier](https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square)](https://github.com/prettier/prettier) [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff) +[![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv) QRules is a Python package for **validating and generating particle reactions** using quantum number conservation rules. The user only has to provide a certain set of diff --git a/docs/install.md b/docs/install.md index 41d991f8..b3d79e5d 100644 --- a/docs/install.md +++ b/docs/install.md @@ -9,7 +9,6 @@ The fastest way of installing this package is through PyPI or Conda: ::::{tab-set} - :::{tab-item} PyPI ```shell @@ -17,7 +16,6 @@ python3 -m pip install qrules ``` ::: - :::{tab-item} Conda ```shell @@ -25,7 +23,6 @@ conda install -c conda-forge qrules ``` ::: - :::: This installs the [latest release](https://github.com/ComPWA/qrules/releases) that you @@ -46,64 +43,10 @@ can be installed as follows: python3 -m pip install git+https://github.com/ComPWA/qrules@main ``` -## Editable installation - -It is highly recommend to use the more dynamic -{ref}`'editable installation' `. This allows -you to: - -- exactly {ref}`pin all dependencies ` - to a specific version, so that your work is **reproducible**. -- edit the source code of the framework and - {doc}`help improving it `. - -For this, you first need to get the source code with [Git](https://git-scm.com): - -```shell -git clone https://github.com/ComPWA/qrules.git -cd qrules -``` - -Next, you install the project in editable mode with either -[Conda](https://docs.conda.io) or [`pip`](https://pypi.org/project/pip). It's -recommended to use Conda, because this also pins the version of Python. - -::::{tab-set} - -:::{tab-item} Conda - -```shell -conda env create -``` - -This installs the project in a Conda environment following the definitions in -[`environment.yml`](https://github.com/ComPWA/qrules/blob/main/environment.yml). - -::: - -:::{tab-item} PyPI - -1. **[Recommended]** Create a virtual environment with - [`venv`](https://docs.python.org/3/library/venv.html) (see - {ref}`here `). - -2. Install the project as an - {ref}`'editable installation' ` with - {ref}`additional packages ` for the - developer and all dependencies pinned through - [constraints files](https://pip.pypa.io/en/stable/user_guide/#constraints-files): - - ```shell - python3 -m pip install -c .constraints/py3.x.txt -e .[dev] - ``` +## Developer installation +:::{include} ../CONTRIBUTING.md +:start-after: **[compwa.github.io/develop](https://compwa.github.io/develop)**! ::: -:::: - -See {ref}`compwa:develop:Updating` for how to update the dependencies when new -commits come in. - -That's all! Have a look at {doc}`/usage` to try out the package. You can also have a -look at {doc}`compwa:develop` for tips on how to work with this 'editable' developer -setup! +That's all! Have a look at {doc}`/usage` to try out the package. You can also have a look at {doc}`compwa:develop` for tips on how to work with this 'editable' developer setup! diff --git a/environment.yml b/environment.yml deleted file mode 100644 index 28571326..00000000 --- a/environment.yml +++ /dev/null @@ -1,9 +0,0 @@ -name: qrules -channels: - - defaults -dependencies: - - python==3.9.* - - pip - - graphviz - - pip: - - -c .constraints/py3.9.txt -e .[dev] diff --git a/pyproject.toml b/pyproject.toml index f7259cc2..98aaf201 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -89,7 +89,7 @@ jupyter = [ ] sty = [ "mypy >=0.730", # attrs and error code support - "pre-commit >=1.4.0", + "pre-commit-uv", "qrules[types]", "ruff", ] @@ -141,7 +141,7 @@ where = ["src"] [tool.setuptools_scm] local_scheme = "no-local-version" -version_scheme = "post-release" +version_scheme = "only-version" write_to = "src/qrules/version.py" [tool.coverage.run] @@ -197,117 +197,6 @@ module = ["sphinx.*"] ignore_missing_imports = true module = ["tqdm.*"] -[tool.pixi.project] -channels = ["conda-forge"] -platforms = ["linux-64"] - -[tool.pixi.activation.env] -PRETTIER_LEGACY_CLI = "1" - -[tool.pixi.dependencies] -graphviz = "*" -python = "3.9.*" - -[tool.pixi.environments] -default = {features = [ - "all", - "dev", - "doc", - "jupyter", - "sty", - "test", - "types", - "viz", -]} - -[tool.pixi.feature.dev.tasks.ci] -depends_on = ["cov", "docnb", "linkcheck", "sty"] - -[tool.pixi.feature.dev.tasks.cov] -cmd = """ -pytest tests/unit \ - --cov-fail-under=85 \ - --cov-report=html \ - --cov-report=xml \ - --cov=qrules -""" - -[tool.pixi.feature.dev.tasks.doc] -cmd = """ -sphinx-build \ - --builder=html \ - --fail-on-warning \ - --keep-going \ - --show-traceback \ - docs/ docs/_build/html -""" - -[tool.pixi.feature.dev.tasks.doclive] -cmd = """ -sphinx-autobuild \ - --builder=html \ - --open-browser \ - --re-ignore='.*/__pycache__/.*' \ - --re-ignore='.*/.ipynb_checkpoints/.*' \ - --re-ignore='.*\\.tmp' \ - --re-ignore='docs/_build/.*' \ - --re-ignore='docs/_images/.*' \ - --re-ignore='docs/_static/logo\\..*' \ - --re-ignore='docs/.*\\.csv' \ - --re-ignore='docs/.*\\.gv' \ - --re-ignore='docs/.*\\.inv' \ - --re-ignore='docs/.*\\.json' \ - --re-ignore='docs/.*\\.pickle' \ - --re-ignore='docs/.*\\.yaml' \ - --re-ignore='docs/.*\\.yml' \ - --re-ignore='docs/api/.*' \ - --watch=docs \ - --watch=src \ - docs/ docs/_build/html -""" - -[tool.pixi.feature.dev.tasks.docnb] -cmd = "pixi run doc" -env = {EXECUTE_NB = "yes"} - -[tool.pixi.feature.dev.tasks.docnb-force] -cmd = "pixi run doc" -env = {FORCE_EXECUTE_NB = "yes"} - -[tool.pixi.feature.dev.tasks.docnblive] -cmd = "pixi run doclive" -env = {EXECUTE_NB = "yes"} - -[tool.pixi.feature.dev.tasks.linkcheck] -cmd = """ -sphinx-build \ - --builder=linkcheck \ - --show-traceback \ - docs/ docs/_build/linkcheck -""" - -[tool.pixi.feature.dev.tasks.nb] -cmd = "pytest --nbmake docs" - -[tool.pixi.feature.dev.tasks.sty] -cmd = "pre-commit run -a" -env = {SKIP = "pyright"} - 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