From d51af340c6d434c7fc4deca20e13aa54bede86b5 Mon Sep 17 00:00:00 2001
From: Remco de Boer <29308176+redeboer@users.noreply.github.com>
Date: Mon, 28 Oct 2024 14:46:49 +0100
Subject: [PATCH] FIX: define dev dependencies as dependency groups (#35)
* BREAK: convert package dependencies to notebook dependencies
* ENH: define script dependencies inline
https://docs.astral.sh/uv/guides/scripts/#declaring-script-dependencies
* FIX: remove `pre-commit-uv` from environment
* FIX: remove developer dependencies from extras
* FIX: run envionment with Python 3.12
* MAINT: apply Ruff fixes
* MAINT: update lock files
---
.binder/postBuild | 5 +-
.github/workflows/amptools.yml | 8 +-
.pre-commit-config.yaml | 6 +-
binder/runtime.txt | 2 +-
docs/widget.ipynb | 2 +-
pyproject.toml | 43 ++-
script/makeComparison.py | 7 +
uv.lock | 529 ++++++++-------------------------
8 files changed, 168 insertions(+), 434 deletions(-)
diff --git a/.binder/postBuild b/.binder/postBuild
index 48d530c..06472a5 100755
--- a/.binder/postBuild
+++ b/.binder/postBuild
@@ -3,9 +3,12 @@ set -ex
curl -LsSf https://astral.sh/uv/install.sh | sh
source $HOME/.cargo/env
uv export \
- --extra jupyter \
+ --group jupyter \
+ --group notebooks \
+ --no-dev \
> requirements.txt
uv pip install \
--requirement requirements.txt \
--system
+rm requirements.txt
uv cache clean
diff --git a/.github/workflows/amptools.yml b/.github/workflows/amptools.yml
index 9cc6b9a..d51401a 100644
--- a/.github/workflows/amptools.yml
+++ b/.github/workflows/amptools.yml
@@ -79,12 +79,14 @@ jobs:
make -j$(nproc)
- uses: actions/setup-python@v4
with:
- python-version: "3.10"
- - run: pip install .
+ python-version: "3.12"
+ - uses: astral-sh/setup-uv@v3
+ with:
+ enable-cache: true
- name: Run executables
run: |
./print_amplitudes -c zlm.cfg > .print_amplitudes.log
- python ./makeComparison.py
+ uv run makeComparison.py
./draw_zlm
working-directory: script
- uses: actions/upload-artifact@v3
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index ffae723..6c33858 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -9,7 +9,7 @@ repos:
- id: check-useless-excludes
- repo: https://github.com/ComPWA/policy
- rev: 0.5.0
+ rev: 0.5.5
hooks:
- id: colab-toc-visible
- id: check-dev-files
@@ -49,7 +49,7 @@ repos:
metadata.vscode
- repo: https://github.com/astral-sh/ruff-pre-commit
- rev: v0.7.0
+ rev: v0.7.1
hooks:
- id: ruff
args: [--fix]
@@ -119,6 +119,6 @@ repos:
- "-y=defaultIndent: ' '"
- repo: https://github.com/astral-sh/uv-pre-commit
- rev: 0.4.24
+ rev: 0.4.27
hooks:
- id: uv-lock
diff --git a/binder/runtime.txt b/binder/runtime.txt
index 5509089..d2aca3a 100644
--- a/binder/runtime.txt
+++ b/binder/runtime.txt
@@ -1 +1 @@
-python-3.10
+python-3.12
diff --git a/docs/widget.ipynb b/docs/widget.ipynb
index ffb0376..f6f2920 100644
--- a/docs/widget.ipynb
+++ b/docs/widget.ipynb
@@ -437,7 +437,7 @@
" sign = l_str[6]\n",
" indices = eval(l_str[9:])\n",
" superscript = f\"({sign})\"\n",
- " subscript = f\"{\",\".join(f\"{i:+d}\" if i else str(i) for i in indices)}\"\n",
+ " subscript = f\"{','.join(f'{i:+d}' if i else str(i) for i in indices)}\"\n",
" label = f\"[𝑙]{superscript}{subscript}\"\n",
" row = w.HBox([w.HTML(label), sliders[f\"{l_str}_mag\"], sliders[f\"{l_str}_phi\"]])\n",
" l_sliders[sign].append(row)\n",
diff --git a/pyproject.toml b/pyproject.toml
index aaf371b..fad0ba3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -3,47 +3,44 @@ build-backend = "setuptools.build_meta"
requires = ["setuptools"]
[project]
-dependencies = [
- "ampform",
- "ipympl",
- "ipywidgets",
- "ipywidgets",
- "matplotlib",
- "pandas",
- "sympy",
- "uproot",
-]
description = "Investigation of symbolic amplitude models for the GlueX experiment"
license = {text = "BSD 3-Clause License"}
name = "gluex-amplitude"
requires-python = ">=3.12"
version = "0.0.0"
-[project.optional-dependencies]
+[project.readme]
+content-type = "text/markdown"
+file = "README.md"
+
+[dependency-groups]
dev = [
- "gluex-amplitude[doc]",
- "gluex-amplitude[jupyter]",
- "gluex-amplitude[sty]",
+ "ruff",
+ {include-group = "doc"},
+ {include-group = "jupyter"},
+]
+doc = [
+ "jupyter-book",
+ {include-group = "notebooks"},
]
-doc = ["jupyter-book"]
jupyter = [
"jupyterlab",
- "jupyterlab-code-formatter >=3.0.0",
+ "jupyterlab-code-formatter",
"jupyterlab-git",
"jupyterlab-lsp",
"jupyterlab-myst",
"python-lsp-ruff",
"python-lsp-server[rope]",
+ {include-group = "notebooks"},
]
-sty = [
- "pre-commit-uv",
- "ruff",
+notebooks = [
+ "ampform",
+ "ipympl",
+ "ipywidgets",
+ "matplotlib",
+ "sympy",
]
-[project.readme]
-content-type = "text/markdown"
-file = "README.md"
-
[tool.ruff]
extend-include = ["*.ipynb"]
preview = true
diff --git a/script/makeComparison.py b/script/makeComparison.py
index 49f62eb..4694687 100644
--- a/script/makeComparison.py
+++ b/script/makeComparison.py
@@ -1,3 +1,10 @@
+# /// script
+# dependencies = [
+# "numpy",
+# "pandas",
+# "uproot",
+# ]
+# ///
import re
import numpy as np
diff --git a/uv.lock b/uv.lock
index 2ac7ec1..4f1502b 100644
--- a/uv.lock
+++ b/uv.lock
@@ -134,48 +134,6 @@ wheels = [
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