From 4d0e106c0bd99fc538e4b37e49970f58b9da2b02 Mon Sep 17 00:00:00 2001
From: Ali Sajid Imami <395482+AliSajid@users.noreply.github.com>
Date: Tue, 12 Sep 2023 11:45:09 -0400
Subject: [PATCH 1/4] ci: always upload test results to codecov

---
 .github/workflows/test-coverage.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 2c5bb502..7fe465e9 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -43,7 +43,7 @@ jobs:
         shell: bash
 
       - name: Upload test results
-        if: failure()
+        if: always()
         uses: actions/upload-artifact@v3
         with:
           name: coverage-test-failures

From 65f3ff12f7182d17ab5cdb2693be01337948ed15 Mon Sep 17 00:00:00 2001
From: Ali Sajid Imami <395482+AliSajid@users.noreply.github.com>
Date: Tue, 12 Sep 2023 11:45:09 -0400
Subject: [PATCH 2/4] =?UTF-8?q?Bump=20version:=200.99.543=20=E2=86=92=200.?=
 =?UTF-8?q?99.544?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .bumpversion.cfg | 2 +-
 DESCRIPTION      | 2 +-
 codemeta.json    | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index 32d5efa2..22ff9d16 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.99.543
+current_version = 0.99.544
 commit = True
 commit_args = --no-verify
 
diff --git a/DESCRIPTION b/DESCRIPTION
index b6d31c2c..e45ad8af 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: drugfindR
 Title: Investigate iLINCS for candidate repurposable drugs
-Version: 0.99.543
+Version: 0.99.544
 Authors@R: c(
     person(given = c("Ali", "Sajid"),
            family = "Imami",
diff --git a/codemeta.json b/codemeta.json
index d198df0f..6fc32735 100644
--- a/codemeta.json
+++ b/codemeta.json
@@ -7,7 +7,7 @@
   "codeRepository": "https://github.com/CogDisResLab/drugfindR",
   "issueTracker": "https://github.com/CogDisResLab/drugfindR/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.99.543",
+  "version": "0.99.544",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",

From d8fd4840f455ca5762c9d5e381e08e0999b2d8f7 Mon Sep 17 00:00:00 2001
From: Ali Sajid Imami <395482+AliSajid@users.noreply.github.com>
Date: Tue, 12 Sep 2023 11:45:43 -0400
Subject: [PATCH 3/4] ci: scope the codecov token to the run

---
 .github/workflows/test-coverage.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 7fe465e9..05d4d8aa 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -13,6 +13,7 @@ jobs:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
     steps:
       - uses: actions/checkout@v3

From dc2a597f6169cd64e7f0bacd8e1db9e77800b340 Mon Sep 17 00:00:00 2001
From: Ali Sajid Imami <395482+AliSajid@users.noreply.github.com>
Date: Tue, 12 Sep 2023 11:45:43 -0400
Subject: [PATCH 4/4] =?UTF-8?q?Bump=20version:=200.99.544=20=E2=86=92=200.?=
 =?UTF-8?q?99.545?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .bumpversion.cfg | 2 +-
 DESCRIPTION      | 2 +-
 codemeta.json    | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index 22ff9d16..b2050af3 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.99.544
+current_version = 0.99.545
 commit = True
 commit_args = --no-verify
 
diff --git a/DESCRIPTION b/DESCRIPTION
index e45ad8af..37b28a20 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: drugfindR
 Title: Investigate iLINCS for candidate repurposable drugs
-Version: 0.99.544
+Version: 0.99.545
 Authors@R: c(
     person(given = c("Ali", "Sajid"),
            family = "Imami",
diff --git a/codemeta.json b/codemeta.json
index 6fc32735..4b653db4 100644
--- a/codemeta.json
+++ b/codemeta.json
@@ -7,7 +7,7 @@
   "codeRepository": "https://github.com/CogDisResLab/drugfindR",
   "issueTracker": "https://github.com/CogDisResLab/drugfindR/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.99.544",
+  "version": "0.99.545",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",