diff --git a/CHANGELOG.md b/CHANGELOG.md index b0a201d..9f1162d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,7 @@ This project adheres to [Semantic Versioning](http://semver.org/). ## [x.x.x] Update BEAN1 documentation reference +Update GLS and RFC1 hg19 coordinates (zero based off by one) ## [0.7.1] Update rank score model diff --git a/stranger/resources/variant_catalog_grch37.json b/stranger/resources/variant_catalog_grch37.json index 073aa10..2b4defc 100755 --- a/stranger/resources/variant_catalog_grch37.json +++ b/stranger/resources/variant_catalog_grch37.json @@ -974,7 +974,7 @@ "SweGenMean": 12.66, "SweGenStd": 4.000, "LocusStructure": "(GCA)*", - "ReferenceRegion": "2:191745599-191745646", + "ReferenceRegion": "2:191745598-191745646", "Disease": "GDPAG", "NormalMax": 20, "PathologicMin": 90 @@ -991,7 +991,7 @@ "SweGenMean": 26.77, "SweGenStd": 18.68, "LocusStructure": "(AARRG)*", - "ReferenceRegion": "4:39350045-39350099", + "ReferenceRegion": "4:39350044-39350099", "Disease": "CANVAS", "NormalMax": 11, "PathologicMin": 12 diff --git a/stranger/resources/variant_catalog_hg19.json b/stranger/resources/variant_catalog_hg19.json index fb4bdbc..47316aa 100755 --- a/stranger/resources/variant_catalog_hg19.json +++ b/stranger/resources/variant_catalog_hg19.json @@ -974,7 +974,7 @@ "SweGenMean": 12.66, "SweGenStd": 4.000, "LocusStructure": "(GCA)*", - "ReferenceRegion": "chr2:191745599-191745646", + "ReferenceRegion": "chr2:191745598-191745646", "Disease": "GDPAG", "NormalMax": 20, "PathologicMin": 90 @@ -991,7 +991,7 @@ "SweGenMean": 26.77, "SweGenStd": 18.68, "LocusStructure": "(AARRG)*", - "ReferenceRegion": "chr4:39350045-39350099", + "ReferenceRegion": "chr4:39350044-39350099", "Disease": "CANVAS", "NormalMax": 11, "PathologicMin": 12