build_and_publish.yml

name: Publish to PyPI, Docker Hub and GitHub IO

on:
 release:
  types:
   - created

jobs:
 build-n-publish:
  name: Build and publish Python distribution to PyPI
  runs-on: ubuntu-latest
  permissions:
    id-token: write
  steps:
   - name: Check out git repository
     uses: actions/checkout@v4

   - name: Set up Python
     uses: actions/setup-python@v5
     with:
      python-version-file: ".python_version"

   - name: Install uv
     uses: astral-sh/setup-uv@v3
     with:
       enable-cache: true
       cache-dependency-glob: "uv.lock"

    - name: Install the project
        run: uv sync --all-extras --dev

      - name: Run tests
        # For example, using `pytest`
        run: uv run pytest tests

   - name: Install build tools
     run: >-
        python -m
        pip install
        wheel
        twine
        --user

   - name: Build a binary wheel and a source tarball
     run: >-
        python
        setup.py
        sdist
        bdist_wheel

   - name: Publish distribution 📦 to PyPI
     uses: pypa/gh-action-pypi-publish@release/v1

 docker-image-CI:
   name: Docker Image CI
   runs-on: ubuntu-latest
   steps:

    - name: Check out git repository
      uses: actions/checkout@v3

    - name: Publish main image (Dockerfile) to Registry
      uses: elgohr/Publish-Docker-Github-Action@v5
      with:
        name: clinicalgenomics/stranger
        username: ${{ secrets.DOCKER_USERNAME }}
        password: ${{ secrets.DOCKER_PASSWORD }}
        tags: "latest,${{ github.event.release.tag_name }}"