From e2fefc2bebf4d9612af61100da1bdbac09980cfb Mon Sep 17 00:00:00 2001 From: Markus Johansson Date: Tue, 18 May 2021 11:00:38 +0200 Subject: [PATCH] Added GATK to SV/ cancer SV list --- CHANGELOG.md | 1 + scout/constants/__init__.py | 6 +++++- 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 319768e45b..3f9578bbeb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,6 +18,7 @@ About changelog [here](https://keepachangelog.com/en/1.0.0/) - Support LoqusDB REST API queries - Add a docker-compose-matchmaker under scout/containers/development to test matchmaker locally - Script to investigate consequences of symbol search bug +- Added GATK to list of SV and cancer SV callers ### Fixed - Make MitoMap link work for hg38 again - Export Variants feature crashing when one of the variants has no primary transcripts diff --git a/scout/constants/__init__.py b/scout/constants/__init__.py index 99e3ccc6c4..60eaa71d75 100644 --- a/scout/constants/__init__.py +++ b/scout/constants/__init__.py @@ -123,8 +123,12 @@ {"id": "gatk", "name": "GATK"}, {"id": "freebayes", "name": "Freebayes"}, ], - "cancer_sv": [{"id": "manta", "name": "Manta"}], + "cancer_sv": [ + {"id": "manta", "name": "Manta"}, + {"id": "gatk", "name": "GATK"}, + ], "sv": [ + {"id": "gatk", "name": "GATK"}, {"id": "cnvnator", "name": "CNVnator"}, {"id": "delly", "name": "Delly"}, {"id": "tiddit", "name": "TIDDIT"},