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ont-load-inventory-test.yaml
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- # maps to CURIE prefix: biolink
url: https://raw.githubusercontent.com/biolink/biolink-model/master/biolink-model.owl.ttl
file: biolink-model.owl.ttl
download: true
title: Biolink meta-model
# - # maps to CURIE prefix: UMLSSC (the trailling slash here is important:)
# url: http://purl.bioontology.org/ontology/STY/
# file: umls-semantictypes.ttl
# download: false
# title: UMLS Semantic Types
# - # maps to CURIE prefix: ATC
# download: false
# file: umls-atc.ttl
# title: Anatomical Therapeutic Chemical Classification System
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ATC
# - # maps to CURIE prefix CHV
# download: false
# file: umls-chv.ttl
# title: Consumer Health Vocabulary
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/CHV
# - # maps to CURIE prefix CPT
# download: false
# file: umls-cpt.ttl
# title: Current Procedural Terminology
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/CPT
# - # maps to CURIE prefix DRUGBANK
# download: false
# file: umls-drugbank.ttl
# title: DrugBank
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/DRUGBANK
# - # maps to CURIE prefix FMA
# download: false
# file: umls-fma.ttl
# title: Foundational Model of Anatomy
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/FMA
# - # maps to CURIE prefix GO
# download: false
# file: umls-go.ttl
# title: Gene Ontology
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/GO
# - # maps to CURIE prefix HCPCS
# download: false
# file: umls-hcpcs.ttl
# title: Healthcare Common Procedure Coding System
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/HCPCS
# - # maps to CURIE prefix CPT
# download: false
# file: umls-hcpt.ttl
# title: CPT in HCPCS
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/HCPT
# - # maps to CURIE prefix HGNC
# download: false
# file: umls-hgnc.ttl
# title: HUGO Gene Nomenclature Committee
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/HGNC
# - # maps to CURIE prefix umls
# download: false
# file: umls-hl7.ttl
# title: HL7 Version 3.0
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/HL7
# - # maps to CURIE prefix HP
# download: false
# file: umls-hpo.ttl
# title: Human Phenotype Ontology
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/HPO
# - # maps to CURIE prefix ICD10
# download: false
# file: umls-icd10.ttl
# title: International Classification of Diseases and Related Health Problems,
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10
# - # maps to CURIE prefix ICD10
# download: false
# file: umls-icd10ae.ttl
# title: ICD-10, American English Equivalents
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10AE
# - # maps to CURIE prefix ICD10
# download: false
# file: umls-icd10cm.ttl
# title: International Classification of Diseases, Tenth Revision, Clinical Modification
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10CM
# - # maps to CURIE prefix ICD10PCS
# download: false
# file: umls-icd10pcs.ttl
# title: ICD-10 Procedure Coding System
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10PCS
# - # maps to CURIE prefix ICD9
# download: false
# file: umls-icd9cm.ttl
# title: International Classification of Diseases, Ninth Revision, Clinical Modification
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD9CM
# - # maps to CURIE prefix LOINC
# download: false
# file: umls-lnc.ttl
# title: Logical Observation Identifiers Names and Codes
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/LNC
# - # maps to CURIE prefix MEDDRA
# download: false
# file: umls-mdr.ttl
# title: MedDRA
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MEDDRA
# - # maps to CURIE prefix umls
# download: false
# file: umls-med-rt.ttl
# title: Medication Reference Terminology
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MED-RT
# - # maps to CURIE prefix umls
# download: false
# file: umls-medlineplus.ttl
# title: MedlinePlus Health Topics
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MEDLINEPLUS
# - # maps to CURIE prefix MESH
# download: false
# file: umls-msh.ttl
# title: Medical Subject Headings
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MSH
# - # maps to CURIE prefix umls
# download: false
# file: umls-mth.ttl
# title: Metathesaurus Names
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/MTH
# - # maps to CURIE prefix NCBITaxon
# download: false
# file: umls-ncbi.ttl
# title: NCBI
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NCBITAXON
# - # maps to CURIE prefix NCIT
# download: false
# file: umls-nci.ttl
# title: NCI Thesaurus
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NCI
# - # maps to CURIE prefix NDDF
# download: false
# file: umls-nddf.ttl
# title: National Drug Data File
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF
#- # maps to CURIE prefix NDFRT
# download: false
# file: umls-ndfrt.ttl
# title: National Drug File - Reference Terminology
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT
# - # maps to CURIE prefix OMIM
# download: false
# file: umls-omim.ttl
# title: Online Mendelian Inheritance in Man
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/OMIM
# - # maps to CURIE prefix PDQ
# download: false
# file: umls-pdq.ttl
# title: Physician Data Query
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/PDQ
# - # maps to CURIE prefix RXNORM
# download: false
# file: umls-rxnorm.ttl
# title: RXNORM
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/RXNORM
# - # maps to CURIE prefix SNOMED
# download: false
# file: umls-snomedct_us.ttl
# title: SNOMED Clinical Terms US Edition
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/SNOMEDCT
# # ==> unable to find an online set of pages for SNOMEDCT_VET concepts but I want to find one so that
# # I can include SNOMEDCT_VET in the kg2 build, thus am keeping this section commented out [SAR]:
# # -
# # download: false
# # file: umls-snomedct_vet.ttl
# # title: Veterinary Extension to SNOMED CT
# # url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/SNOMEDCT_VET
# # ==> this section (UMLS Source Terminology Names) seems like it could be useful in the future, but
# # I can't find purls to its concepts anywhere:
# # -
# # download: false
# # file: umls-src.ttl
# # title: Source Terminology Names (UMLS)
# # url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/SRC
# - # maps to CURIE prefix VANDF
# download: false
# file: umls-vandf.ttl
# title: National Drug File
# url: https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF
# - # maps to CURIE prefix: BFO
# url: http://purl.obolibrary.org/obo/bfo.owl
# file: bfo.owl
# download: true
# title: Basic Formal Ontology
#- maps to CURIE prefix: GO
# url: http://purl.obolibrary.org/obo/go/extensions/go-plus.owl
# file: go-plus.owl
# title: Gene Ontology
# download: true
# - # maps to CURIE prefix: RO
# url: http://purl.obolibrary.org/obo/ro.owl
# file: ro.owl
# download: true
# title: Relation Ontology
# -
# url: http://purl.obolibrary.org/obo/uberon/ext.owl
# file: uberon-ext.owl
# download: true
# title: Uber-anatomy Ontology
# -
# url: http://www.ebi.ac.uk/efo/efo.owl
# file: efo.owl
# download: true
# title: Experimental Factor Ontology
# -
# url: http://purl.obolibrary.org/obo/fma.owl
# file: fma.owl
# download: true
# title: Foundational Model of Anatomy
# -
# url: http://purl.obolibrary.org/obo/ddanat.owl
# file: ddanat.owl
# download: true
# title: Dictyostelium discoideum anatomy
-
url: http://purl.obolibrary.org/obo/cl.owl
file: cl.owl
download: true
title: Cell Ontology
# -
# url: http://purl.obolibrary.org/obo/chebi.owl
# file: chebi.owl
# download: true
# title: Chemical Entities of Biological Interest
# -
# url: http://purl.obolibrary.org/obo/foodon.owl
# file: foodon.owl
# download: false
# title: FOODON (Food Ontology)
# -
# url: http://data.bioontology.org/ontologies/ORDO/submissions/15/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb
# file: ordo.owl
# download: true
# title: ORPHANET Rare Disease Ontology
# -
# url: http://purl.obolibrary.org/obo/ehdaa2.owl
# file: ehdaa2.owl
# download: true
# title: Human developmental anatomy, abstract
# -
# url: http://purl.obolibrary.org/obo/bspo.owl
# file: bspo.owl
# download: true
# title: Biological Spatial Ontology
# -
# url: http://purl.obolibrary.org/obo/hp.owl
# file: hp.owl
# download: true
# title: Human Phenotype Ontology
# -
# url: http://purl.obolibrary.org/obo/nbo.owl
# file: nbo.owl
# download: true
# title: Neuro Behavior Ontology
# -
# url: http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl
# file: taxslim.owl
# download: true
# title: NCBITaxon
# -
# url: http://purl.obolibrary.org/obo/pato.owl
# file: pato.owl
# download: true
# title: Phenotypic Quality Ontology
# - # maps to CURIE prefix MONDO
# url: http://purl.obolibrary.org/obo/mondo.owl
# file: mondo.owl
# download: true
# title: MONDO Disease Ontology
# -
# url: http://purl.obolibrary.org/obo/doid.owl
# file: doid.owl
# download: true
# title: Disease Ontology
# -
# url: http://purl.obolibrary.org/obo/pr.owl
# file: pr.owl
# download: true
# title: Protein Ontology
# -
# url: http://purl.obolibrary.org/obo/ino.owl
# file: ino.owl
# download: true
# title: Interaction Network Ontology
# - # maps to CURIE prefix GENEPIO
# url: http://purl.obolibrary.org/obo/genepio.owl
# file: genepio.owl
# download: true
# title: Genomic Epidemiology Ontology