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CHANGELOG
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# Changelog
Tracking changes of CDeep3M Version 2.x.x
## [Unreleased changes]
## [2.1.5] - 2020-08-19
### Fixed
- bugs related to reading multi-page TIF stacks
### Added
- handling file extension variations
- enhancement support for TIF stacks
## [2.1.4] - 2020-07-19
### Fixed
- bugs reading CPU limits of EnsemblePredictions and Create_overlays
- bug reading CPU limits Colab
## [2.1.3] - 2020-07-18
### Added
- Can set CPU limitations in configs/cpu_resources.txt
- added reading CPU limits to enhance_stack, EnsemblePredictions and Create_overlays
## [2.1.2] - 2020-04-18
### Fixed
- Binarization if labels above 1
- Enhancements call for training data
### Added
- Logo
- LICENSE
- Same enhancements for validation dataset
## [2.1.1] - 2020-03-22
### Changed
- Remove test for binary data in PreprocessPackage
- Update sample data
## [2.1.0] - 2020-03-04
### Added
- Echo CDeep3M Version from runtraining and runprediction
- rundemo2.sh (runs very brief training and plots training graphs)
### Changed
- fixed fatal error in caffetrain.sh causing runtraining to run without generating trained data
- fixed error in PreprocessTrainingData.py starting enhance_stack.py
- fixed config file writing from PreprocessTraining
## [2.0.3] - 2020-03-02
### Changed
Create_overlays.py: faster and reduce memory requirements
## [2.0.2] - 2020-02-29
### Added
- Started CHANGELOG
- PreprocessTraining writes file tracking configuration of augmentations for reproducibility
### Fixed
- Fixed bugs related to PreprocessTraining
## [2.0.1] - 2020-02-20
### Changed
- Denoising algorithm, to improve hyperthreading and reduce memory footprint
- Default configuration that enhancements are performed during training and segmentation
- Default configuration that overlays are generated at the end of segmentation
## [2.0.0] - 2020-02-10
### Added
- Image enhancemencements
- Overlays of raw images with segmentation
### Changed
- Improved postprocessing speed
- Changed padding to continuous instead of reflective
### Fixed
- A number of bugs fixed
## [beta] - 2019-08-17
### Added
- Secondary (noise, contrast etc) and tertiary augmentations (size)
- Use of multiple training datasets
## [alpha] - 2019
### Changed
- Converted all octave scripts to python3