[BBPBGLIB-1059] Implement conductance compensation for incorporating gap junctions into the thalamic SONATA circuit

[WeinaJi]

This issue is a duplicate of the JIRA ticket BBPBGLIB-1059. We will move the discussions here.

Regarding the conductance compensation developed by orena1:

For Elisabetta's work with BlueConfig and the circuit in the legacy format, she was using the script

/gpfs/bbp.cscs.ch/project/proj55/software/gap_junctions/pylibs/manager_python.py

Which was executed by:

/gpfs/bbp.cscs.ch/project/proj55/software/gap_junctions/hoclib_thalamus_0p3/init.hoc

This is the full pydamus version

/gpfs/bbp.cscs.ch/home/amsalem/rsync/Blue_Brain/Experiments_Reproduction/Coupling_Coefficient/pylibs/manager_python_damus.py

The only code that is relevant for running a simulation is under this condition:

elif settings['procedure_type'] in ['validation_sim', 'find_holding_current']: 

in it, specifically the code below:

# load g_pap
&
# load current clamps

We also had to recalculate the current compensation, but different steady state current per cell is already supported, so it will not be hard to incorporate.
This is the h5 file for gpas:

/gpfs/bbp.cscs.ch/project/proj55/amsalem/gap_junctions/circ19_11_2019_gjs_19_20_20/rm_correction/Circ_mc2_Rt_Remove_ch_all_Det_stoch_True_Dis_holding_False_Correc_type_impedance_tool_Cm0p01_Num_iter_10/num_0/g_pas_passive.hdf5

and this is the one for the current compensation:

/gpfs/bbp.cscs.ch/project/proj55/amsalem/gap_junctions/circ19_11_2019_gjs_19_20_20_new_holding/find_holding_current/vc_ampFile/Circ_mc2_Rt_Remove_ch_none_Det_stoch_True_Dis_holding_False_gjc0p2_Change_mecomb_False_manual_MEComboInfoFile_False_Load_g_pas_True_Correc_iter_loadlast/num_0/holding_per_gid.hdf5

These settings are extracted from this file:

/gpfs/bbp.cscs.ch/project/proj55/iavarone/releases/simulations/spontaneous_evoked/CorrectCTFiberAll_Backgroundwith_afferents_MLNoise25_CTNoise4/MLStim4/MLNoise0/CTNoise0/settings.p