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# Packages that start with the following names are skipped
# We skip those packages from our Singularity index to safe some space.
# If you need a package or a package group from this list, please create a PR and remove / comment-out the line.
# Adding packages to this list can be done by running
# > python remove-old-builds.py ./
# on the singularity package index/folder and then grepping portions out of it, as needed, e.g. with:
> python remove-old-builds.py ./ | grep bioconductor | grep r3 | sort
bioconductor-bsgenome
galaxy-lib
# everything that starts with lib*
lib
bioconductor-pd
bioconductor-mesh
bioconductor-phastcons100way
blasr_libcpp
bcbio-nextgen
bcbio-nextgen-vm
bioconductor-txdb.
bioconductor-epitxdb.
bioconductor-qdnaseq.
bioconductor-rnbeads.
bioconductor-ensdb.
bioconductor-mus
bioconductor-pwmenrich.
bioconductor-alternativesplicingevents.
bioconductor-fdb.
bioconductor-cadd.
bioconductor-fitcons.
bioconductor-huexexonprobesetlocation
bioconductor-illuminahumanmethylation27kanno.
bioconductor-illuminahumanmethylation450kanno.
bioconductor-illuminahumanmethylationepicanno.
bioconductor-mafdb.
bioconductor-pcagopromoter.
bioconductor-qdnaseq.
bioconductor-rcistarget.
bioconductor-tcgawgbsdata.
bioconductor-snplocs.
bioconductor-mafh5.
bioconductor-chipxpressdata
bioconductor-phastcons7way
bioconductor-worm
bioconductor-xenopus
bioconductor-xlaevis
bioconductor-xtrasnplocs.hsapiens
bioconductor-yeast2
bioconductor-ye6100
bioconductor-ygs98
bioconductor-xtropicalis
bioconductor-zebrafish
bioconductor-adme16cod
bioconductor-agcdf
bioconductor-ag.db
bioconductor-agprobe
bioconductor-ath1121501
bioconductor-bovine
bioconductor-canine
bioconductor-canine2
bioconductor-celegans
bioconductor-chicken
bioconductor-clariomdhumanprobeset
bioconductor-clariomdhumantranscriptcluster
bioconductor-clariomshumanhttranscriptcluster
bioconductor-clariomshumantranscriptcluster
bioconductor-clariomsmousehttranscriptcluster
bioconductor-clariomsmousetranscriptcluster
bioconductor-clariomsrathttranscriptcluster
bioconductor-clariomsrattranscriptcluster
bioconductor-docdf
bioconductor-do.db
bioconductor-doprobe
bioconductor-drosgenome1
bioconductor-drosophila2
bioconductor-ecoli2
bioconductor-gghumanmethcancerpanelv1
bioconductor-go.db
bioconductor-h10kcod
bioconductor-h20kcod
bioconductor-hcg110
bioconductor-hdo.db
bioconductor-hgfocus
bioconductor-hgu133a
bioconductor-hgu133a2
bioconductor-hgu133b
bioconductor-hgu133plus2
bioconductor-hgu219
bioconductor-hgu95a
bioconductor-hgu95av2
bioconductor-hgu95b
bioconductor-hgu95c
bioconductor-hgu95d
bioconductor-hgu95e
bioconductor-hguatlas13k
bioconductor-hgubeta7
bioconductor-hgudkfz31
bioconductor-hgug4100a
bioconductor-hgug4101a
bioconductor-hgug4110b
bioconductor-hgug4111a
bioconductor-hgug4112a
bioconductor-hgug4845a
bioconductor-hguqiagenv3
bioconductor-hi16cod
bioconductor-hom.at.inp
bioconductor-hom.ce.inp
bioconductor-hom.dm.inp
bioconductor-hom.dr.inp
bioconductor-hom.hs.inp
bioconductor-hom.mm.inp
bioconductor-hom.rn.inp
bioconductor-hom.sc.inp
bioconductor-hpo
bioconductor-hs25kresogen
bioconductor-hs6ug171
bioconductor-hsagilentdesign026652
bioconductor-hta20probeset
bioconductor-hta20transcriptcluster
bioconductor-hthgu133a
bioconductor-hthgu133b
bioconductor-hthgu133plusa
bioconductor-hthgu133plusb
bioconductor-hthgu133pluspm
bioconductor-htmg430a
bioconductor-htmg430b
bioconductor-htmg430pm
bioconductor-htrat230pm
bioconductor-htratfocus
bioconductor-hu35ksuba
bioconductor-hu35ksubb
bioconductor-hu35ksubc
bioconductor-hu35ksubd
bioconductor-hu6800
bioconductor-huex10stprobeset
bioconductor-huex10sttranscriptcluster
bioconductor-hugene10stprobeset
bioconductor-hugene10sttranscriptcluster
bioconductor-hugene11stprobeset
bioconductor-hugene11sttranscriptcluster
bioconductor-hugene20stprobeset
bioconductor-hugene20sttranscriptcluster
bioconductor-hugene21stprobeset
bioconductor-hugene21sttranscriptcluster
bioconductor-huo22
bioconductor-hwgcod
bioconductor-illumina450probevariants
bioconductor-illuminahumanmethylation27k
bioconductor-illuminahumanv1
bioconductor-illuminahumanv2
bioconductor-illuminahumanv2beadid
bioconductor-illuminahumanv3
bioconductor-illuminahumanv4
bioconductor-illuminahumanwgdaslv3
bioconductor-illuminahumanwgdaslv4
bioconductor-illuminamousev1
bioconductor-illuminamousev1p1
bioconductor-illuminamousev2
bioconductor-illuminaratv1
bioconductor-indac
bioconductor-jazaerimetadata
bioconductor-kegg.db
bioconductor-lapointe
bioconductor-lrbase.ath.eg
bioconductor-lrbase.bta.eg
bioconductor-lrbase.cel.eg
bioconductor-lrbase.dme.eg
bioconductor-lrbase.dre.eg
bioconductor-lrbase.gga.eg
bioconductor-lrbase.hsa.eg
bioconductor-lrbase.mmu.eg
bioconductor-lrbase.pab.eg
bioconductor-lrbase.rno.eg
bioconductor-lrbase.ssc.eg
bioconductor-lrbase.xtr.eg
bioconductor-lumihumanall
bioconductor-lumimouseall
bioconductor-lumiratall
bioconductor-m10kcod
bioconductor-m20kcod
bioconductor-mgu74a
bioconductor-mgu74av2
bioconductor-mgu74b
bioconductor-mgu74bv2
bioconductor-mgu74c
bioconductor-mgu74cv2
bioconductor-mguatlas5k
bioconductor-mgug4104a
bioconductor-mgug4120a
bioconductor-mgug4121a
bioconductor-mgug4122a
bioconductor-mi16cod
bioconductor-mirbase
bioconductor-mirbaseversions
bioconductor-mirnatap
bioconductor-mm24kresogen
bioconductor-mmagilentdesign026655
bioconductor-moe430a
bioconductor-moe430b
bioconductor-moex10stprobeset
bioconductor-moex10sttranscriptcluster
bioconductor-mogene10stprobeset
bioconductor-mogene10sttranscriptcluster
bioconductor-mogene11stprobeset
bioconductor-mogene11sttranscriptcluster
bioconductor-mogene20stprobeset
bioconductor-mogene20sttranscriptcluster
bioconductor-mogene21stprobeset
bioconductor-mogene21sttranscriptcluster
bioconductor-mouse4302
bioconductor-mouse430a2
bioconductor-mpedbarray
bioconductor-mpo.db
bioconductor-mta10probeset
bioconductor-mta10transcriptcluster
bioconductor-mu11ksuba
bioconductor-mu11ksubb
bioconductor-mu15v1
bioconductor-mu19ksuba
bioconductor-mu19ksubb
bioconductor-mu19ksubc
bioconductor-mu22v3
bioconductor-mwgcod
bioconductor-norway981
bioconductor-nugohs1a520180
bioconductor-nugomm1a520177
bioconductor-octad.db
bioconductor-operonhumanv3
bioconductor-org.ag.eg
bioconductor-org.at.tair
bioconductor-org.bt.eg
bioconductor-org.ce.eg
bioconductor-org.cf.eg
bioconductor-org.dm.eg
bioconductor-org.dr.eg
bioconductor-org.eck12.eg
bioconductor-org.ecsakai.eg
bioconductor-org.gg.eg
bioconductor-org.hs.eg
bioconductor-org.mm.eg
bioconductor-org.mmu.eg
bioconductor-org.mxanthus
bioconductor-org.pf.plasmo
bioconductor-org.pt.eg
bioconductor-org.rn.eg
bioconductor-org.sc.sgd
bioconductor-org.ss.eg
bioconductor-org.xl.eg
bioconductor-orthology.eg
bioconductor-panther
bioconductor-partheenmetadata
bioconductor-pedbarrayv10
bioconductor-pedbarrayv9
bioconductor-pfam.db
bioconductor-pocrcannotation
bioconductor-porcine
bioconductor-r10kcod
bioconductor-rae230a
bioconductor-rae230b
bioconductor-raex10stprobeset
bioconductor-raex10sttranscriptcluster
bioconductor-ragene10stprobeset
bioconductor-ragene10sttranscriptcluster
bioconductor-ragene11stprobeset
bioconductor-ragene11sttranscriptcluster
bioconductor-ragene20stprobeset
bioconductor-ragene20sttranscriptcluster
bioconductor-ragene21stprobeset
bioconductor-ragene21sttranscriptcluster
bioconductor-rat2302
bioconductor-reactome
bioconductor-rgu34a
bioconductor-rgu34b
bioconductor-rgu34c
bioconductor-rguatlas4k
bioconductor-rgug4105a
bioconductor-rgug4130a
bioconductor-rgug4131a
bioconductor-ri16cod
bioconductor-rnagilentdesign028282
bioconductor-rnu34
bioconductor-roberts2005annotation
bioconductor-rta10probeset
bioconductor-rta10transcriptcluster
bioconductor-rtu34
bioconductor-rwgcod
bioconductor-shdz
bioconductor-somascan
bioconductor-synaptome
bioconductor-targetscan.hs.eg
bioconductor-targetscan.mm.eg
bioconductor-u133x3p
lbioconductor-rgu34a
snakemake-storage-plugin
snakemake-executor-plugin
#
# Skip exlicit Bioconductor packages with very old R versions.
# There is still a "bioconductor-biodist:1.52.0" version, just build against a newer R.
# The r3* chunk that is here skipped safes 929G
#
bioconductor-a4base:1.28.0--r341_0
bioconductor-a4core:1.24.0--r3.3.2_0
bioconductor-a4core:1.28.0--r341_0
bioconductor-a4preproc:1.24.0--r3.3.2_0
bioconductor-a4preproc:1.28.0--r341_0
bioconductor-a4reporting:1.28.0--r341_0
bioconductor-abadata:1.10.0--r341_0
bioconductor-abadata:1.14.0--r351_1
bioconductor-abaenrichment:1.10.0--r341hfc679d8_0
bioconductor-abseqr:1.2.0--r351_0
bioconductor-absseq:1.22.8--r3.3.2_0
bioconductor-absseq:1.34.1--r341_0
bioconductor-absseq:1.38.0--r351_0
bioconductor-acde:1.10.0--r341_0
bioconductor-acde:1.14.0--r351_0
bioconductor-acde:1.6.0--r3.3.2_0
bioconductor-acgh:1.54.0--r3.3.2_0
bioconductor-acgh:1.58.0--r341hfc679d8_0
bioconductor-acme:2.32.0--r3.3.2_0
bioconductor-acme:2.36.0--r341h470a237_0
bioconductor-adme16cod.db:3.4.0--r351_0
bioconductor-adme16cod.db:3.4.0--r36_2
bioconductor-adme16cod.db:3.4.0--r36_3
bioconductor-adsplit:1.46.0--r3.3.2_0
bioconductor-adsplit:1.50.0--r341hfc679d8_0
bioconductor-affxparser:1.48.0--r3.3.1_0
bioconductor-affxparser:1.48.0--r3.3.2_0
bioconductor-affxparser:1.52.0--r341hfc679d8_0
bioconductor-affxparser:1.56.0--r351hf484d3e_0
bioconductor-affy:1.50.0--r3.3.2_0
bioconductor-affycomp:1.52.0--r3.3.2_0
bioconductor-affycomp:1.56.0--r341_0
bioconductor-affycompatible:1.40.0--r341_0
bioconductor-affydata:1.24.0--r3.3.2_0
bioconductor-affydata:1.24.0--r3.4.1_0
bioconductor-affydata:1.26.0--r3.4.1_0
bioconductor-affydata:1.30.0--r351_0
bioconductor-affyexpress:1.42.0--r3.3.2_0
bioconductor-affyhgu133a2expr:1.20.0--r351_1
bioconductor-affyhgu133aexpr:1.22.0--r351_1
bioconductor-affyhgu133plus2expr:1.18.0--r351_1
bioconductor-affyio:1.42.0--r3.3.2_0
bioconductor-affyio:1.50.0--r341h470a237_0
bioconductor-affyio:1.54.0--r351h14c3975_0
bioconductor-affymetrixdatatestfiles:0.22.0--r351_0
bioconductor-affymoe4302expr:1.22.0--r351_0
bioconductor-affypdnn:1.50.0--r3.3.2_0
bioconductor-agcdf:2.18.0--r351_0
bioconductor-agcdf:2.18.0--r36_2
bioconductor-agcdf:2.18.0--r36_3
bioconductor-ag.db:3.2.3--r351_0
bioconductor-ag.db:3.2.3--r351_1
bioconductor-ag.db:3.2.3--r36_3
bioconductor-ag.db:3.2.3--r36_4
bioconductor-agdex:1.24.0--r3.3.2_0
bioconductor-agdex:1.28.0--r341_0
bioconductor-agilp:3.12.0--r341_0
bioconductor-agilp:3.16.0--r351_0
bioconductor-agimicrorna:2.32.0--r351_0
bioconductor-agprobe:2.18.0--r351_0
bioconductor-agprobe:2.18.0--r36_2
bioconductor-agprobe:2.18.0--r36_3
bioconductor-ahcytobands:0.99.0--r351_0
bioconductor-ahcytobands:0.99.0--r351_1
bioconductor-ahcytobands:0.99.0--r36_2
bioconductor-ahcytobands:0.99.0--r36_3
bioconductor-aims:1.12.0--r341_0
bioconductor-aims:1.8.0--r3.3.2_0
bioconductor-aldex2:1.12.0--r341_0
bioconductor-aldex2:1.8.0--r3.3.2_0
bioconductor-all:1.18.0--r3.3.2_0
bioconductor-all:1.18.0--r3.4.1_0
bioconductor-all:1.20.0--r3.4.1_0
bioconductor-all:1.22.0--r341_0
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