mkdocs.yml

site_name: FLeCS
site_url: https://bertinus.github.io

nav:
  - Home: index.md
  - FLeCS:
      - Cell Population: cell_population.md
      - Sets: sets.md
      - Trajectories: trajectory.md
      - Interventions: intervention.md
      - Mutations: mutation.md
      - Utils: utils.md
  - FLeCS.Data:
      - data/utils.md
      - data/interaction_data.md
      - data/gene_regulatory_networks.md
      - data/protein_interactions.md
      - data/composite_graphs.md
      - data/pathways.md
      - data/random_graphs.md

#theme:
#  name: "material"
theme: readthedocs

plugins:
  - search
  - autorefs
  - mkdocstrings

markdown_extensions:
  - pymdownx.arithmatex:
      generic: true

extra_javascript:
  - javascripts/mathjax.js
  - https://polyfill.io/v3/polyfill.min.js?features=es6
  - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js