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chromosome-sizes.rst

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Chromosome Sizes

Chromosome sizes can be used to create chromosome label and chromosome grid tracks. They consist of a tab-separated file containing chromosome names and sizes as columns:

chr1    249250621
chr2    243199373
chr3    198022430
...

Chromosome sizes can be imported into the higlass server using the --filetype chromsizes-tsv and --datatype chromsizes parameters. A coordSystem should be included to identify the assembly that these chromosomes define.

ingest_tileset --filetype chromsizes-tsv --datatype chromsizes --coordSystem hg19 chromSizes.tsv