Single Cell Pipeline

For a detailed guide see INSTALL

What is it?

single cell pipeline is suite of workflows for analysing the single cell data generated by DLP+.

Where to get it

The source code is currently hosted on GitHub at: https://github.com/shahcompbio/single_cell_pipeline

docker containers are available at https://quay.io/organization/singlecellpipeline

conda packages are available at https://anaconda.org/shahcompbio

License

Documentation

The official documentation is hosted on http://single_cell_pipeline.readthedocs.io/

Getting Help

Please contact the developers at

Diljot Grewal [email protected]
Andrew Mcpherson [email protected]