From 0a20244ddc0eb94417028bbe9d95e56db3fdb609 Mon Sep 17 00:00:00 2001 From: Ali Youssef Date: Sat, 5 Oct 2024 16:58:05 +0300 Subject: [PATCH] CRAN --- DESCRIPTION | 2 +- man/LimROTS.Rd | 2 +- man/UPS1.Case4.Rd | 2 +- man/bootstrapS.Rd | 2 +- man/bootstrapSamples.limRots.Rd | 2 +- man/permutatedS.Rd | 2 +- man/proteogenomicPD.Rd | 2 +- man/testStatistic_with_covariates.Rd | 2 +- 8 files changed, 8 insertions(+), 8 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 671c82e..74917d9 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -30,7 +30,7 @@ Description: Differential expression analysis is a prevalent method utilised in methodology to simulate complex experimental designs. LimROTS is a hybrid method integrating empirical bayes and reproducibility-optimized statistics for robust analysis - of proteomics and metabolomics data + of proteomics and metabolomics data. License: Artistic-2.0 Encoding: UTF-8 Roxygen: list(markdown = TRUE) diff --git a/man/LimROTS.Rd b/man/LimROTS.Rd index d8cbaea..087fd00 100644 --- a/man/LimROTS.Rd +++ b/man/LimROTS.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/LimROTS.R +% Please edit documentation in R/LimROTS.r \name{LimROTS} \alias{LimROTS} \title{LimROTS: A Hybrid Method Integrating Empirical Bayes and diff --git a/man/UPS1.Case4.Rd b/man/UPS1.Case4.Rd index c41c009..c97395f 100644 --- a/man/UPS1.Case4.Rd +++ b/man/UPS1.Case4.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/UPS1.Case4.R +% Please edit documentation in R/UPS1.Case4.r \docType{data} \name{UPS1.Case4} \alias{UPS1.Case4} diff --git a/man/bootstrapS.Rd b/man/bootstrapS.Rd index db28517..88449f7 100644 --- a/man/bootstrapS.Rd +++ b/man/bootstrapS.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/Bootstrap_functions.R +% Please edit documentation in R/Bootstrap_functions.r \name{bootstrapS} \alias{bootstrapS} \title{Generate Bootstrap Samples with Optional Pairing} diff --git a/man/bootstrapSamples.limRots.Rd b/man/bootstrapSamples.limRots.Rd index 1a0f0fe..bbe28b3 100644 --- a/man/bootstrapSamples.limRots.Rd +++ b/man/bootstrapSamples.limRots.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/Bootstrap_functions.R +% Please edit documentation in R/Bootstrap_functions.r \name{bootstrapSamples.limRots} \alias{bootstrapSamples.limRots} \title{Generate Stratified Bootstrap Samples for limRots} diff --git a/man/permutatedS.Rd b/man/permutatedS.Rd index 2023f65..09e5351 100644 --- a/man/permutatedS.Rd +++ b/man/permutatedS.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/Bootstrap_functions.R +% Please edit documentation in R/Bootstrap_functions.r \name{permutatedS} \alias{permutatedS} \title{Generate Permutated Samples} diff --git a/man/proteogenomicPD.Rd b/man/proteogenomicPD.Rd index 791c581..3531130 100644 --- a/man/proteogenomicPD.Rd +++ b/man/proteogenomicPD.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/proteogenomicPD.R +% Please edit documentation in R/proteogenomicPD.r \docType{data} \name{proteogenomicPD} \alias{proteogenomicPD} diff --git a/man/testStatistic_with_covariates.Rd b/man/testStatistic_with_covariates.Rd index 754895d..61f1dba 100644 --- a/man/testStatistic_with_covariates.Rd +++ b/man/testStatistic_with_covariates.Rd @@ -1,5 +1,5 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/LM_with_limma.R +% Please edit documentation in R/LM_with_limma.r \name{testStatistic_with_covariates} \alias{testStatistic_with_covariates} \title{Perform Linear Modeling with Covariates using Limma}