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environment_bio_embeddings.yml
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name: env_bio_embeddings
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- absl-py=1.4.0=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2023.5.7=hbcca054_0
- certifi=2023.5.7=pyhd8ed1ab_0
- charset-normalizer=3.1.0=pyhd8ed1ab_0
- cudatoolkit=11.8.0=h37601d7_11
- fastcache=1.1.0=py38h0a891b7_5
- idna=3.4=pyhd8ed1ab_0
- jax=0.1.77=py_0
- jaxlib=0.1.55=py38h32f6830_0
- jsonnet=0.20.0=py38h8dc9893_0
- ld_impl_linux-64=2.40=h41732ed_0
- libabseil=20230125.2=cxx17_h59595ed_2
- libblas=3.9.0=17_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=17_linux64_openblas
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.1.0=he5830b7_0
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libgomp=13.1.0=he5830b7_0
- liblapack=3.9.0=17_linux64_openblas
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.23=pthreads_h80387f5_0
- libprotobuf=4.23.2=hd1fb520_3
- libsqlite=3.42.0=h2797004_0
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libuuid=2.38.1=h0b41bf4_0
- libzlib=1.2.13=h166bdaf_4
- ncurses=6.3=h27087fc_1
- numpy=1.24.3=py38h59b608b_0
- openssl=3.1.1=hd590300_1
- opt_einsum=3.3.0=pyhd8ed1ab_1
- packaging=23.1=pyhd8ed1ab_0
- pip=23.1.2=pyhd8ed1ab_0
- platformdirs=3.5.1=pyhd8ed1ab_0
- pooch=1.7.0=pyha770c72_3
- pysocks=1.7.1=pyha2e5f31_6
- python=3.8.16=he550d4f_1_cpython
- python_abi=3.8=3_cp38
- readline=8.2=h8228510_1
- requests=2.31.0=pyhd8ed1ab_0
- scipy=1.10.1=py38h59b608b_3
- setuptools=67.7.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- tk=8.6.12=h27826a3_0
- typing-extensions=4.6.3=hd8ed1ab_0
- typing_extensions=4.6.3=pyha770c72_0
- wheel=0.40.0=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- pip:
- aiohttp==3.8.4
- aiosignal==1.3.1
- alabaster==0.7.13
- alembic==1.11.1
- appdirs==1.4.4
- async-timeout==4.0.2
- atomicwrites==1.4.1
- attrs==23.1.0
- babel==2.12.1
- bio-embeddings==0.2.2
- bio-embeddings-allennlp==0.9.2
- bio-embeddings-bepler==0.0.1
- bio-embeddings-cpcprot==0.0.1
- bio-embeddings-deepblast==0.1.0
- bio-embeddings-plus==0.1.1
- bio-embeddings-tape-proteins==0.5
- biopython==1.81
- blinker==1.6.2
- blis==0.7.9
- boto3==1.26.147
- botocore==1.29.147
- catalogue==1.0.2
- click==8.1.3
- cmaes==0.9.1
- colorlog==6.7.0
- conllu==4.4
- contourpy==1.0.7
- cycler==0.11.0
- cymem==2.0.7
- docutils==0.20.1
- editdistance==0.6.2
- exceptiongroup==1.1.1
- fair-esm==0.4.0
- filelock==3.12.0
- flaky==3.7.0
- flask==2.3.2
- flask-cors==3.0.10
- fonttools==4.39.4
- frozenlist==1.3.3
- fsspec==2023.5.0
- ftfy==6.1.1
- gensim==3.8.3
- gevent==22.10.2
- greenlet==2.0.2
- h5py==3.8.0
- huggingface-hub==0.15.1
- humanize==3.14.0
- imagesize==1.4.1
- importlib-metadata==4.13.0
- importlib-resources==5.12.0
- iniconfig==2.0.0
- itsdangerous==2.1.2
- jax-unirep==1.0.3
- jinja2==3.1.2
- jmespath==1.0.1
- joblib==1.2.0
- jsonpickle==3.0.1
- kaleido==0.2.1
- kiwisolver==1.4.4
- lightning-utilities==0.8.0
- llvmlite==0.40.0
- lmdb==1.4.1
- lock==2018.3.25.2110
- mako==1.2.4
- markupsafe==2.1.3
- matplotlib==3.7.1
- multidict==6.0.4
- multipledispatch==0.6.0
- murmurhash==1.0.9
- nltk==3.8.1
- numba==0.57.0
- numpydoc==1.5.0
- optuna==3.2.0
- overrides==4.1.2
- pandas==1.5.3
- parsimonious==0.10.0
- pillow==9.5.0
- plac==1.1.3
- plotly==5.14.1
- pluggy==1.0.0
- preshed==3.0.8
- protobuf==3.20.3
- pygments==2.15.1
- pynndescent==0.5.10
- pyparsing==3.0.9
- pytest==7.3.1
- python-dateutil==2.8.2
- python-slugify==5.0.2
- pytorch-lightning==1.8.6
- pytorch-pretrained-bert==0.6.2
- pytorch-transformers==1.1.0
- pytz==2023.3
- pyyaml==6.0
- regex==2023.6.3
- responses==0.23.1
- ruamel-yaml==0.17.31
- ruamel-yaml-clib==0.2.7
- s3transfer==0.6.1
- scikit-learn==0.24.2
- sentencepiece==0.1.99
- smart-open==6.3.0
- snowballstemmer==2.2.0
- spacy==2.3.9
- sphinx==7.0.1
- sphinxcontrib-applehelp==1.0.4
- sphinxcontrib-devhelp==1.0.2
- sphinxcontrib-htmlhelp==2.0.1
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.3
- sphinxcontrib-serializinghtml==1.1.5
- sqlalchemy==2.0.15
- sqlparse==0.4.4
- srsly==1.0.6
- tenacity==8.2.2
- tensorboardx==2.6
- text-unidecode==1.3
- thinc==7.4.6
- threadpoolctl==3.1.0
- tokenizers==0.13.3
- tomli==2.0.1
- torch==1.9.1
- torchmetrics==0.11.4
- tqdm==4.65.0
- transformers==4.29.2
- types-pyyaml==6.0.12.10
- typing-utils==0.1.0
- umap-learn==0.5.3
- unidecode==1.3.6
- urllib3==1.26.16
- wasabi==0.10.1
- wcwidth==0.2.6
- werkzeug==2.3.4
- word2number==1.1
- yarl==1.9.2
- zipp==3.15.0
- zope-event==4.6
- zope-interface==6.0
prefix: /home/projects/vaccine/people/nilsch/mambaforge/envs/env_bio_embeddings