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environment.yml
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name: env
channels:
- nvidia
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- _sysroot_linux-64_curr_repodata_hack=3=h69a702a_13
- asttokens=2.2.1=pyhd8ed1ab_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- binutils_impl_linux-64=2.40=hf600244_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.5.7=hbcca054_0
- cairo=1.16.0=hbbf8b49_1016
- cffi=1.15.1=py39he91dace_3
- cuda-nvcc=11.3.58=h2467b9f_0
- cudatoolkit=11.8.0=h37601d7_11
- curl=8.1.2=h409715c_0
- decorator=5.1.1=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- harfbuzz=7.3.0=hdb3a94d_0
- icu=72.1=hcb278e6_0
- jedi=0.18.2=pyhd8ed1ab_0
- kernel-headers_linux-64=4.18.0=he073ed8_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.20.1=h81ceb04_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=8.1.2=h409715c_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.76.3=hebfc3b9_0
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libsanitizer=12.2.0=h46fd767_19
- libsqlite=3.42.0=h2797004_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=ha587672_6
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.15=h0b41bf4_0
- libxml2=2.11.4=h0d562d8_0
- libzlib=1.2.13=h166bdaf_4
- make=4.3=hd18ef5c_1
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- openssl=3.1.1=hd590300_1
- pandoc=2.19.2=h32600fe_2
- pango=1.50.14=heaa33ce_1
- parso=0.8.3=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pip=23.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- prompt-toolkit=3.0.38=pyha770c72_0
- prompt_toolkit=3.0.38=hd8ed1ab_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.15.1=pyhd8ed1ab_0
- python=3.9.16=h2782a2a_0_cpython
- python_abi=3.9=3_cp39
- r-argparser=0.7.1=r42hc72bb7e_1
- r-askpass=1.1=r42h06615bd_3
- r-assertthat=0.2.1=r42hc72bb7e_3
- r-backports=1.4.1=r42h06615bd_1
- r-base=4.2.3=hfabd6f2_3
- r-base64enc=0.1_3=r42h06615bd_1005
- r-bit=4.0.5=r42h06615bd_0
- r-bit64=4.0.5=r42h06615bd_1
- r-blob=1.2.4=r42hc72bb7e_0
- r-broom=1.0.4=r42hc72bb7e_0
- r-bslib=0.4.2=r42hc72bb7e_0
- r-cachem=1.0.8=r42h57805ef_0
- r-callr=3.7.3=r42hc72bb7e_0
- r-cellranger=1.1.0=r42hc72bb7e_1005
- r-cli=3.6.1=r42h38f115c_0
- r-clipr=0.8.0=r42hc72bb7e_1
- r-colorspace=2.1_0=r42h133d619_0
- r-config=0.3.1=r42hc72bb7e_1
- r-conflicted=1.2.0=r42h785f33e_0
- r-cpp11=0.4.3=r42hc72bb7e_0
- r-crayon=1.5.2=r42hc72bb7e_1
- r-curl=4.3.3=r42hf9611b0_2
- r-data.table=1.14.8=r42h133d619_0
- r-dbi=1.1.3=r42hc72bb7e_1
- r-dbplyr=2.3.2=r42hc72bb7e_0
- r-digest=0.6.31=r42h38f115c_0
- r-dplyr=1.1.2=r42ha503ecb_0
- r-dtplyr=1.3.1=r42hc72bb7e_0
- r-ellipsis=0.3.2=r42h06615bd_1
- r-evaluate=0.21=r42hc72bb7e_0
- r-fansi=1.0.4=r42h133d619_0
- r-farver=2.1.1=r42h7525677_1
- r-fastmap=1.1.1=r42h38f115c_0
- r-fontawesome=0.5.1=r42hc72bb7e_0
- r-forcats=1.0.0=r42hc72bb7e_0
- r-fs=1.6.2=r42ha503ecb_0
- r-gargle=1.4.0=r42h785f33e_0
- r-generics=0.1.3=r42hc72bb7e_1
- r-ggplot2=3.4.2=r42hc72bb7e_0
- r-glue=1.6.2=r42h06615bd_1
- r-googledrive=2.1.0=r42hc72bb7e_0
- r-googlesheets4=1.1.0=r42h785f33e_0
- r-gtable=0.3.3=r42hc72bb7e_0
- r-haven=2.5.2=r42h38f115c_0
- r-highr=0.10=r42hc72bb7e_0
- r-hms=1.1.3=r42hc72bb7e_0
- r-htmltools=0.5.5=r42h38f115c_0
- r-httr=1.4.6=r42hc72bb7e_0
- r-ids=1.0.1=r42hc72bb7e_2
- r-isoband=0.2.7=r42h38f115c_1
- r-jquerylib=0.1.4=r42hc72bb7e_1
- r-jsonlite=1.8.4=r42h133d619_0
- r-knitr=1.43=r42hc72bb7e_0
- r-labeling=0.4.2=r42hc72bb7e_2
- r-lattice=0.21_8=r42h133d619_0
- r-lifecycle=1.0.3=r42hc72bb7e_1
- r-lubridate=1.9.2=r42h133d619_1
- r-magrittr=2.0.3=r42h06615bd_1
- r-mass=7.3_60=r42h57805ef_0
- r-matrix=1.5_4.1=r42h316c678_0
- r-memoise=2.0.1=r42hc72bb7e_1
- r-mgcv=1.8_42=r42he1ae0d6_0
- r-mime=0.12=r42h06615bd_1
- r-modelr=0.1.11=r42hc72bb7e_0
- r-munsell=0.5.0=r42hc72bb7e_1005
- r-nlme=3.1_162=r42hac0b197_0
- r-openssl=2.0.6=r42habfbb5e_0
- r-pillar=1.9.0=r42hc72bb7e_0
- r-pkgconfig=2.0.3=r42hc72bb7e_2
- r-prettyunits=1.1.1=r42hc72bb7e_2
- r-processx=3.8.1=r42h133d619_0
- r-progress=1.2.2=r42hc72bb7e_3
- r-ps=1.7.5=r42h133d619_0
- r-purrr=1.0.1=r42h133d619_0
- r-r6=2.5.1=r42hc72bb7e_1
- r-ragg=1.2.5=r42h85cdef0_1
- r-rappdirs=0.3.3=r42h06615bd_1
- r-rcolorbrewer=1.1_3=r42h785f33e_1
- r-rcpp=1.0.10=r42h38f115c_0
- r-readr=2.1.4=r42h38f115c_0
- r-readxl=1.4.2=r42h81ef4d7_0
- r-rematch=1.0.1=r42hc72bb7e_1005
- r-rematch2=2.1.2=r42hc72bb7e_2
- r-reprex=2.0.2=r42hc72bb7e_1
- r-rlang=1.1.1=r42ha503ecb_0
- r-rmarkdown=2.22=r42hc72bb7e_0
- r-rstudioapi=0.14=r42hc72bb7e_1
- r-rvest=1.0.3=r42hc72bb7e_1
- r-sass=0.4.6=r42ha503ecb_0
- r-scales=1.2.1=r42hc72bb7e_1
- r-selectr=0.4_2=r42hc72bb7e_2
- r-stringi=1.7.12=r42hc0c3e09_1
- r-stringr=1.5.0=r42h785f33e_0
- r-svglite=2.1.1=r42he8f5e61_0
- r-sys=3.4.2=r42h57805ef_0
- r-systemfonts=1.0.4=r42h0ff29ef_1
- r-textshaping=0.3.6=r42h24cd192_5
- r-tibble=3.2.1=r42h133d619_1
- r-tidyr=1.3.0=r42h38f115c_0
- r-tidyselect=1.2.0=r42hc72bb7e_0
- r-tidyverse=2.0.0=r42h785f33e_0
- r-timechange=0.2.0=r42h38f115c_0
- r-tinytex=0.45=r42hc72bb7e_0
- r-tzdb=0.4.0=r42ha503ecb_0
- r-utf8=1.2.3=r42h133d619_0
- r-uuid=1.1_0=r42h06615bd_1
- r-vctrs=0.6.2=r42ha503ecb_0
- r-viridislite=0.4.1=r42hc72bb7e_1
- r-vroom=1.6.3=r42ha503ecb_0
- r-withr=2.5.0=r42hc72bb7e_1
- r-xfun=0.39=r42ha503ecb_0
- r-xml2=1.3.4=r42h1ad5fc0_1
- r-yaml=2.3.7=r42h133d619_0
- rchitect=0.3.40=py39h72bdee0_0
- readline=8.2=h8228510_1
- sed=4.8=he412f7d_0
- setuptools=67.7.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- stack_data=0.6.2=pyhd8ed1ab_0
- sysroot_linux-64=2.28=he073ed8_0
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- traitlets=5.9.0=pyhd8ed1ab_0
- typing_extensions=4.6.2=pyha770c72_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h8ee46fc_1
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.3.0=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h3eb15da_6
- pip:
- absl-py==1.4.0
- appdirs==1.4.4
- astunparse==1.6.3
- atomicwrites==1.4.1
- bio-embeddings==0.2.2
- biopython==1.81
- cachetools==5.3.1
- certifi==2023.5.7
- charset-normalizer==3.1.0
- contourpy==1.0.7
- cycler==0.11.0
- flatbuffers==23.5.26
- fonttools==4.39.4
- gast==0.4.0
- gensim==3.8.3
- google-auth==2.19.0
- google-auth-oauthlib==1.0.0
- google-pasta==0.2.0
- grpcio==1.54.2
- h5py==3.8.0
- humanize==3.14.0
- idna==3.4
- importlib-metadata==4.13.0
- importlib-resources==5.12.0
- jax==0.4.10
- joblib==1.2.0
- keras==2.12.0
- keras-preprocessing==1.1.2
- kiwisolver==1.4.4
- libclang==16.0.0
- llvmlite==0.40.0
- lock==2018.3.25.2110
- markdown==3.4.3
- markupsafe==2.1.2
- matplotlib==3.7.1
- ml-dtypes==0.1.0
- numba==0.57.0
- numpy==1.23.5
- nvidia-cublas-cu11==11.11.3.6
- nvidia-cudnn-cu11==8.6.0.163
- oauthlib==3.2.2
- opt-einsum==3.3.0
- packaging==23.1
- pandas==1.5.3
- pillow==9.5.0
- plotly==5.14.1
- protobuf==4.23.2
- pyasn1==0.5.0
- pyasn1-modules==0.3.0
- pynndescent==0.5.10
- pyparsing==3.0.9
- python-dateutil==2.8.2
- python-slugify==5.0.2
- pytz==2023.3
- pyyaml==6.0
- requests==2.31.0
- requests-oauthlib==1.3.1
- rsa==4.9
- ruamel-yaml==0.17.31
- ruamel-yaml-clib==0.2.7
- scikit-learn==0.24.2
- scipy==1.10.1
- seaborn==0.12.2
- smart-open==6.3.0
- tenacity==8.2.2
- tensorboard==2.12.3
- tensorboard-data-server==0.7.0
- tensorboard-plugin-wit==1.8.1
- tensorflow==2.12.0
- tensorflow-estimator==2.12.0
- tensorflow-io-gcs-filesystem==0.32.0
- termcolor==2.3.0
- text-unidecode==1.3
- threadpoolctl==3.1.0
- torch==1.10.0
- tqdm==4.65.0
- tzdata==2023.3
- umap-learn==0.5.3
- urllib3==1.26.16
- werkzeug==2.3.4
- wrapt==1.14.1
- zipp==3.15.0
prefix: /home/projects/vaccine/people/nilsch/mambaforge/envs/env