- fix(multiple.py): fix delimiter sniffing
fix csv delimiter sniffing, add support for tsv and txt files during loading of pairs in BatchMetrics (dbd60ee)
- docs: update README.md badge (
b5d0713)
- fix: fix comparison operators and move them to Metric class (
1af2e31)
- fix(qmeasure): fix image loading in score method (
5f589c1)
- fix: revert commit 851521b2 (
960957d)
- refactor!: move utility modules to utils subpackage
BREAKING CHANGE: major refactoring of utility functions (d3945b4)
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fix: convert rgb images to grayscale before binarization (
f258f96) -
fix: convert snr and cnr results to np.float64 (
3589350) -
fix(utils.py): fix visualization in _get_binary
add slices to image visualization for 3d data (3afad3a)
- fix: change condition to check for provided snr and cnr parameters
fixes a NameError when calling snr or cnr methods without providing the center or radius parameters (Lookup in _parameter attribute fails when entries have not been created there before) (a6b3ec2)
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fix: add additional checks for snr and cnr visualization (
accaf51) -
fix(utils.py): add check for image dimensions in export_image (
960b833)
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docs(load_data): update deprecation warning in docstring (
b3838f6) -
docs: update docs to exclude deprecation warning (
0a645f6) -
docs(utils): add examples in module docstrings (
dd590f6) -
docs: update docs according to d3945b47 (
772f430) -
docs: add public attribute parameters to class documentation (
1b2b00c)
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feat(export_image): add check for file extension (
977b7c8) -
feat(utils/export.py): add feature to return dict in export_results (
c30d368) -
feat: add functionality for different region types for snr and cnr
add find_largest_region to docs (7495cd1)
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feat: add automatic background and signal center detection for cnr and snr (
1ea9310) -
feat: interactive centers for snr and cnr (
bfa5364)
- perf: update SSIM
update documentation, refactor definition of variable truncate (851521b)
- perf(ImageArray): calculate statistics only on method call
make sure that an ImageArray is returned via numpy ufunc (31524fb)
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docs: add internal API reference (
81a5950) -
docs: update docs
add visualize_2d to docs, fix cross-link for parameter image in MultipleMetrics.report (25f4e92)
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feat(BatchMetrics): add image export in report method (
432c31e) -
feat(export_image): add parameter show_image
add option to select if image should be printed when exporting images (5dff6a4)
- feat: add parameter project_name to report methods
filename is constructed of project_name and default filename if project_name is given (07541a6)
- feat: add function to create image report
move print_image method to utils.py as function and rename to export_image, add parameter to change filename, fix bug when number of fr-metrics is not a multiple of four (cc8b4ff)
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docs: add pre-commit usage in developer guide (
4c313ab) -
docs: Update docs
update developer guide regarding docs generation, rename pages for utility modules and usage (4f35dd3)
- perf: improve performance of load_data
call ImageArray only at the end of load_data function and only if necessary (b3fdecd)
- perf: improve performance of BatchMetrics
add checks to load images only if not already in memory, add function to calculate no-reference metrics only if not already calculated (a0f3a26)
- feat: add function to crop images
cal cropping function during loading if parameter roi is given (140d101)
- docs: update docs
remove sphinx-notfound-page, temporarily disable hoverxref (614d52a)
- docs: add sphinx-autobuild to developer_guide.rst (
59381a4)
- feat: add function to compute multiple metrics at once
rename batch_mode.py to multiple.py, add MultipleMetrics class, move export_metadata to it's own function in utils.py, add base class for classes of type multiple, update class BatchMetrics (6f4f8a7)
- fix: use ImageArray instead of np.ndarray
update according to 40f0d029ad416747135f79e8716de040335da592, fixes mypy (4ecfc86)
- docs: update docs
multiple changes to docstrings and docs rendering and docs building (080045f)
- fix: add Exception and warning to handle non 3D volumes in qmeasure.py (
33e288a)
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build: set specific meson and meson-python versions (
e395ba2) -
build: remove support for Python 3.13 until in stable
Python 3.13 build takes too long or fails, add specific dependency version for meson-python (d6dd0e6)
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feat(batch_mode.py): add parameter data_range to export_metadata (
00cb4c4) -
feat: add parameter to set order of scaling in batch_mode.py (
0c3886c)
- fix: update 2D visualization for snr and cnr
fix visualization based on 4d7c3e02 (0bab2b8)
- build: update numpy dependency for build to be lower than 2.0.0 (
54ac725)
- docs: update Tuple order for visualization methods in snr.py and cnr.py
change Tuple order according to 4d7c3e02 and 0bab2b85 (3aef76d)
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feat: add 2D visualization for class ImageArray (
d09dfad) -
feat: add parameter to export image in visualization functions (
6e418e2)
- fix: change orientation of loaded image array
add rotation and flip when loading from binary, update visualization functions for cnr and snr (4d7c3e0)
- docs: update docstring for load_utils.py:load_raw
add periods to sentences in the "Raises" section of docstring (c3f3591)
- docs: add pre-commit.ci status badge (
b02ca8b)
- feat: add custom visualization
add method for class ImageArray and function visualize_3d for custom visualization of slices of 3d volumes, update documentation for the respective method and function (8423592)
- perf: use attribute of class ImageArray for method describe
attribute mean_value in method describe is now used, fix documentation for class ImageArray (b0830cf)
- fix: remove init.py files for C extensions
import of the package is now possible again (e747cf7)
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docs: change title of Changelog page to Release History (
ef913a6) -
docs: add changelog page (
730ecf1) -
docs: add contributor covenant shield (
1ab08c1)
- feat(load_utils.py): add support for .tiff files (
a7c8b74)
- fix(mad.py): update check for im_slice
in (int or None) int can always be evaluated as true (a245fe9)
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build: add stub files and init.py files for C extensions to build process (
6251b98) -
build: update build_wheels_and_publish.yaml
add fetch_depth for code checkout (1fd84d2)
- build: update workflows
add pull_request trigger for Build, add concurrency for Documentation, add event trigger for Documentation (6e8bc98)
- build: fix build_wheels_and_publish.yaml
add code checkout to github release job (e2c9a39)
- docs: update README.md
update Project Status badge to Active, clear todo list, add contributing, improve documentation (503e4f7)
- docs: rename batch mode page
make "Module" lowercase as all other modules (e1105e1)
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docs: restructure docs into api reference and usage page (
0dad6df) -
docs: add developer guide (
5282655) -
docs: add favicon (
f2b6ee1)
- fix(msssim.py): fix scale weights
parameter scale_weights in msssim now gets converted from list to tensor. Fixes bug where using scale_weights resulted in an error. (b1aad49)
- build: fix build_wheels_and_publish.yaml
add own job for upload to github, Fix test install from PyPI (aa6c1d5)
- build: fix build_wheels_and_publish.yaml
fix permissions for action (23301a2)
- build: fix build_wheels_and_publish.yaml
fix dependency for publishing to GitHub (9a48467)
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build: add semantic release (
9ab3aeb) -
build: add test install after release
tests the install from pypi after publishing (054ffd5)
- docs: add docs for ImageArray
add sphinx generated .rst file for ImageArray class (a8d4b6b)
- feat: add tqdm progress bar (
615d0f3)
- feat(batch_mode.py): improve metadata textfile
add underscores to structure exported textfile in export_metadata (3d00279)
- docs(ssim.py): Fix doc for structural_similarity()
parameter data_range default is None, not 255 (dad5432)
- feat(batch_mode.py): add exceptions for batch mode
raise an exception if file extension is not correctly specified in export_results or export_metadata (be72f3b)
- fix: use np.round instead of round
fixes problems with the new ImageArray class (96579a0)
- fix: add exception in data loading
throws exception when loading a binary image and image size and dimensions do not match; rename ImageArray.mean to ImageArray.mean_value (df53d06)
- feat(batch_mode.py): add function to export metadata
function writes custom parameters and package version to a .txt file (5b8e607)
- feat: add function to get installed version (
12e20ac)
- feat(ImageArray)!: add class for images
subclass of np.ndarray, calculates image statistics (40f0d02)